View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18810_high_21 (Length: 238)
Name: NF18810_high_21
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18810_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 741941 - 741720
Alignment:
| Q |
1 |
tattttaatctttttcttatagnnnnnnntgtaacttataactaannnnnnnattgttgttgtgtaggtgtatggtgctagaccaattagaaggtggctt |
100 |
Q |
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| T |
741941 |
tattttaatctttttcttatagaaaaaaatgtaacttataactaatttttttattgttgttgtgtaggtgtatggtgctagaccaattagaaggtggctt |
741842 |
T |
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| Q |
101 |
gagaaaaaggtggcgacagtgctgtctatgctta--caaggaaagtaattgatgagaatacaacggtttacattgatgttggtccaaatgacagttattt |
198 |
Q |
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| T |
741841 |
gagaaaaaggtggtgacagtgctgtctatgcttatacaaggaaagtaattgatgagaatacaacggtttacattgatgttggtccaaatgacagttattt |
741742 |
T |
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| Q |
199 |
ggtataccgtgtagaaaataat |
220 |
Q |
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|||||||||||||||||||||| |
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| T |
741741 |
ggtataccgtgtagaaaataat |
741720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 57 - 220
Target Start/End: Complemental strand, 42449031 - 42448865
Alignment:
| Q |
57 |
ttgttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggcgacagtgctgtcta---tgcttacaaggaaagtaattgatga |
153 |
Q |
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| T |
42449031 |
ttgttttgtaggtgtatggtgctagaccaattagaagctggcttgagaaaaaggtggtgacagtgttgtctaggatgcttacaaggaaagtaattggtga |
42448932 |
T |
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| Q |
154 |
gaatacaacggtttacattgatgttggtccaaatgacagttatttggtataccgtgtagaaaataat |
220 |
Q |
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| T |
42448931 |
gaatacaacggtttacatcgatgttggtccaaatgacagttatttggtataccgtgttgaaaataat |
42448865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 739756 - 739589
Alignment:
| Q |
54 |
ttgttgttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggcgacagtgctgtct---atgcttacaaggaaagtaattga |
150 |
Q |
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| T |
739756 |
ttgttgtattgtaggtgtatggtgctagatcaattagaaggtggcttgagaagaaggtagtgacagagctgtctaggatgcttataagggaagaaattga |
739657 |
T |
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| Q |
151 |
tgagaatacaacggtttacattgatgttggtccaaatgacagttatttggtataccgtgtagaaaata |
218 |
Q |
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| T |
739656 |
tgaaaatacaacagtttacatcgatgctgatcctaatggaagtggtttggtacaccgtgcagaaaata |
739589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 216
Target Start/End: Original strand, 10047065 - 10047224
Alignment:
| Q |
57 |
ttgttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggcgacagtgctgtctatg---cttacaaggaaagtaattgatga |
153 |
Q |
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| T |
10047065 |
ttgttgtgtaggtgtacggtgctagaccaatttg---gtggcttgagaagaatgtggtgacagagctatctatgatgcttataagggaagaaattgatga |
10047161 |
T |
|
| Q |
154 |
gaatacaacggtttacattgatgttggtccaaatgacagttatttggtataccgtgtagaaaa |
216 |
Q |
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| T |
10047162 |
gaatacaactgtttgcattgatgctggtcctaagggaagtgatttggtataccgtgtcgaaaa |
10047224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 38709028 - 38709154
Alignment:
| Q |
60 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggcgacagtgctgtctatgct---tacaaggaaagtaattgatgagaa |
156 |
Q |
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| T |
38709028 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatataaaggaaaaaattgatgagaa |
38709127 |
T |
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| Q |
157 |
tacaacggtttacattgatgttggtcc |
183 |
Q |
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| T |
38709128 |
cacaactgtatacattgatgttggtcc |
38709154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 60 - 216
Target Start/End: Original strand, 45468757 - 45468916
Alignment:
| Q |
60 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggcgacagtgctgtcta---tgcttacaaggaaagtaattgatgagaa |
156 |
Q |
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| T |
45468757 |
ttgtataggtgtatggagctagaccaatcagaagatggctagagaagaaggtggtgacagaactctctaggatgctcataagagaagaaattgatgagaa |
45468856 |
T |
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| Q |
157 |
tacaacggtttacattgatgttggtccaaatgacagttatttggtataccgtgtagaaaa |
216 |
Q |
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| T |
45468857 |
tacaacggtttacatagatgctggtcctaagggaagcgatttggcataccgtgtagaaaa |
45468916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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