View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18810_low_1 (Length: 942)
Name: NF18810_low_1
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18810_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 18107716 - 18108047
Alignment:
| Q |
9 |
gataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactct |
108 |
Q |
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| T |
18107716 |
gataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttggaacagtgcaagtttggtaactct |
18107815 |
T |
|
| Q |
109 |
ttaggtatgctgctgattttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttctttta |
208 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18107816 |
ttaggtatgct---gattttgtatactagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatttttctttggctttgttctttta |
18107912 |
T |
|
| Q |
209 |
tcatgttttgaggtttggtctttgtgagcaaacctattccaaatacacacacttagagactgaatgcatgaatagtcagaatatttacgatcatgagttt |
308 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18107913 |
tcatgttttgaggtttggtctttgtgagcagacctattccaaatacacacacttagagactgaatgcatgaatagtcagaatatttacgatcatgagttt |
18108012 |
T |
|
| Q |
309 |
atccaatcctaccgtcaaaccatgagacgaaaaca |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
18108013 |
atccaatcctaccgtcaaaccatgagacgaaaaca |
18108047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 614 - 925
Target Start/End: Original strand, 18108953 - 18109264
Alignment:
| Q |
614 |
aaaacttacaaaaatatatctaactacgaacatttgggaaaaatatgaataaccatgcatttgggtaaaacaaagaacaattactttcttgggcaaatta |
713 |
Q |
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| T |
18108953 |
aaaacttacaaaaatatatctaactacaaacatttgggaaaaatatgaataaccatgcatttgggtaaaacaaagaacaattactttcttgggcaaatta |
18109052 |
T |
|
| Q |
714 |
agaagttataccttatatgattctagctaagcaaggaaaagggaatacccaacctagttgcatcaaaaaaccaaaatatacaataaagaataatctccat |
813 |
Q |
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| T |
18109053 |
agaagttataccttatatgattctagctaagcaaggaaaagggaatacccaacctagttgcatcaaaaaaccaaaatatataataaagaataatctccat |
18109152 |
T |
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| Q |
814 |
gacaagaaaactcatttaaccataatatctagactttcatataaatacacaaacaatgaaacatataactcaacaagtgtcataatcaaagcatttgtat |
913 |
Q |
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| T |
18109153 |
gacaagaaaactcatttaaccataatatctagactttcatataaatacacaaacaatgaaacatataactcaacaagtgtcataatcaaagcatttgtat |
18109252 |
T |
|
| Q |
914 |
aactacaatttg |
925 |
Q |
| |
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|||||||||||| |
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|
| T |
18109253 |
aactacaatttg |
18109264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 18138265 - 18137930
Alignment:
| Q |
10 |
ataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactctt |
109 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| |
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| T |
18138265 |
ataatactgcctaataataaatataaatgcagaaattgaaatttcagaaggtaggtatgaatgtactatagtttggaacagtgcaagttaggtaactctt |
18138166 |
T |
|
| Q |
110 |
taggtatgctgctgattttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttat |
209 |
Q |
| |
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||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
18138165 |
tagatatcctg---attttgtatactagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatttttctttggcttcgttcttttat |
18138069 |
T |
|
| Q |
210 |
catgttttgaggtttggtctttgtgag-caaacctattccaaatacacacacttagagactgaatgcatgaatagtcagaatatttacgatcatgagttt |
308 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||| || || |||||| ||||||||||| |
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| T |
18138068 |
catgttttgagg-ttggtctttgtgagaaaaacctattccaaat--acacacttagagattgaatgtatgaattgt--gagtatttattatcatgagttt |
18137974 |
T |
|
| Q |
309 |
atccaatcctaccgtcaaaccatgagacgaaaacaacaaatgta |
352 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||||||||||||| |
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|
| T |
18137973 |
atccaatcctaccatcaaaccatgaccctaaaacaacaaatgta |
18137930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 389 - 535
Target Start/End: Original strand, 18083715 - 18083861
Alignment:
| Q |
389 |
gaagcacatttcatacaaagttagctatggaaaaccactaatgtcattaaagatttacaattgagtttatttataaactactaactgagaaattttgaac |
488 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
18083715 |
gaagcacatttgatacaaagtaagctatggaaaaccacaaatgtcattaatgacttacaattgagtttatttataacatactaactgagaagttttgaac |
18083814 |
T |
|
| Q |
489 |
ttaaaatccatctcatgtaagctgaagatttaaccatatatgtcaat |
535 |
Q |
| |
|
||||||||||| || || |||| ||||||||||||||||||||||| |
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| T |
18083815 |
ttaaaatccatgtcgtgaaagccaaagatttaaccatatatgtcaat |
18083861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 18098195 - 18098397
Alignment:
| Q |
10 |
ataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttgcaacagtgcaagtttggtaactctt |
109 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| | |||||||| |
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| T |
18098195 |
ataatactgtctaataggaaatatcaatgcagaaattgaaaatttagaaggtaggtatcaatgtactatagtttggaacagtaaaagttagataactctt |
18098294 |
T |
|
| Q |
110 |
taggtatgctgctgattttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttat |
209 |
Q |
| |
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||| ||| | |||||| || |||||||||||||||| || ||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |
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| T |
18098295 |
tag--atg-tcctgatt-----ttatagtaacatcttcccaggtcgggtttggtgaatccaagttctga---taatgtttctatggctttgttcttttat |
18098383 |
T |
|
| Q |
210 |
catgttttgaggtt |
223 |
Q |
| |
|
| |||||||||||| |
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|
| T |
18098384 |
cctgttttgaggtt |
18098397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 365 - 531
Target Start/End: Original strand, 18099162 - 18099325
Alignment:
| Q |
365 |
tttaagaagaaaatttagataactg-aagcacatttcatacaaagttagctatggaaaaccactaatgtcattaaagatttacaattgagtttatttata |
463 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||| || |||||| |
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| T |
18099162 |
tttaaaaagaaaatttagatcactggaagcacatttcatacaaagtaagctatggaaaaccacaaatgtcattaatgacttacaatcaag----tttata |
18099257 |
T |
|
| Q |
464 |
aactactaactgagaaattttgaacttaaaatccatctcatgtaagctgaagatttaaccatatatgt |
531 |
Q |
| |
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| |||||||||||| |||| |||||||||||||| | || |||| ||||||||||||||||||| |
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| T |
18099258 |
acacactaactgagaagtttttaacttaaaatccatgttgtgaaagccaaagatttaaccatatatgt |
18099325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 162 - 274
Target Start/End: Complemental strand, 15951824 - 15951715
Alignment:
| Q |
162 |
gtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtttggtctttgtgagc-aaacctattccaaatacacacac |
260 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||| |
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| T |
15951824 |
gtgaatccaatttctgatgttatt-tttcttcggcttcgttcttttatcatgtttaaagg-ttggtctttgtgagcaaaacctattccaaat--acacac |
15951729 |
T |
|
| Q |
261 |
ttagagactgaatg |
274 |
Q |
| |
|
||||||| |||||| |
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| T |
15951728 |
ttagagattgaatg |
15951715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 18082900 - 18082957
Alignment:
| Q |
10 |
ataatactgcctaatatgaaatataaatgcagaaattgaaaatttagaaggtaggtat |
67 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
18082900 |
ataatactgcctaataggaaatatcaatgcagaaattgaaaatttagaaggtaggtat |
18082957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 513 - 561
Target Start/End: Original strand, 18108835 - 18108883
Alignment:
| Q |
513 |
aagatttaaccatatatgtcaatgatcactgttggtccttaatgctaac |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18108835 |
aagatttaaccatatatgtcaatgatcactgttggtccttaatgctaac |
18108883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 11547683 - 11547626
Alignment:
| Q |
27 |
gaaatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttg |
84 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |
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|
| T |
11547683 |
gaaatataaatgcagaaattggaaatttagaaggtatgtatcaatgtactatagtttg |
11547626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 18082978 - 18083074
Alignment:
| Q |
124 |
attttgtattctagtaacatcttcccaagttgggtttggtgaatccaatttctgatgttaatgtttctttggctttgttcttttatcatgttttgaggtt |
223 |
Q |
| |
|
||||||||| ||| |||||||||||| || |||||||||||||||| |||||| ||||||||| |||||||||||||||| | |||||||||||| |
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|
| T |
18082978 |
attttgtatattaggaacatcttcccaggtcaggtttggtgaatccaagctctgat---aatgtttctatggctttgttcttttaacttgttttgaggtt |
18083074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 11552442 - 11552387
Alignment:
| Q |
29 |
aatataaatgcagaaattgaaaatttagaaggtaggtatggatgtactatagtttg |
84 |
Q |
| |
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||||||||||||||||||| ||||||| |||||| |||| ||||||||||||||| |
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|
| T |
11552442 |
aatataaatgcagaaattggaaatttaaaaggtacgtatcaatgtactatagtttg |
11552387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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