View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18810_low_10 (Length: 422)
Name: NF18810_low_10
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18810_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 6500086 - 6499699
Alignment:
| Q |
17 |
aagatgttcctatgttttcttcaaataatgaaaataattcaagtgatgttgatttgtctaatgaagttgttactactttgttaaataatttaacaagtag |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6500086 |
aagatgttcctatgttttcttcaaaaaatgaaaataattcaagtgatgttgatttgtctaatgaagttgttactactttgttaaataatttaacaagtag |
6499987 |
T |
|
| Q |
117 |
agctgtgaaaggtgattctatgattaaatatgctgcaggtagtcaacctggtcctcagtatgaagttatatatggtttggttcaatgtacacctgatttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6499986 |
agctgtgaaaggtgattctatgattaaatatgctgcaggtagtcaacctggtcctcagtatgaagttatatatggtttggttcaatgtacacctgatttg |
6499887 |
T |
|
| Q |
217 |
tctgaaactgattgtaattcatgtttggttgagaatcttcaacaaattcctagttgttgtaataataagattggtggaagagttgttaggcctagttgta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6499886 |
tctgaaactgattgtaattcatgtttggttgagaatcttcaacaaattcctagttgttgtaataataagattggtggaagagttgttaggcctagttgta |
6499787 |
T |
|
| Q |
317 |
acatgagatttgaaacttcttaccttttttatgagcctagagcatcgccgccgccaccgccgccatcatcatctcctccaccagccactac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6499786 |
acatgagatttgaaacttcttaccttttttatgagcctagagcatcgc---cgccaccgccgccatcatcacctcctccaccagccactac |
6499699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 6524078 - 6524140
Alignment:
| Q |
270 |
ttgttgtaataataagattggtggaagagttgttaggcctagttgtaacatgagatttgaaac |
332 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6524078 |
ttgttgtaaagataagaaaggtggaagagttgttaggcctagttgtaacatgagatttgaaac |
6524140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 6523989 - 6524051
Alignment:
| Q |
184 |
atatatggtttggttcaatgtacacctgatttgtctgaaactgattgtaattcatgtttggtt |
246 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
6523989 |
atatatggtcttgttcagtgtacgcctgatttatctgagtcagattgtaattcatgtttggtt |
6524051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University