View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18810_low_11 (Length: 376)
Name: NF18810_low_11
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18810_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 53146908 - 53147249
Alignment:
| Q |
1 |
ctcctccaagggagtggcaaacttgaaaacctgacaaaattgaaagaaattttcagacttctgaataatagattgcaaatacccaagtccacaaatctaa |
100 |
Q |
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| T |
53146908 |
ctcctccaagggagtggcaaacttgaaaacctgacaaaattgaatgaaattttcagacttctgaataatagattgcaaatacccaagtccacaaatctaa |
53147007 |
T |
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| Q |
101 |
cataaagatcataagaaaattattaaactatttgcagcagtatgcaccaattctgtgccatattacaaaagtacaagatcatcaaagcataacagcccca |
200 |
Q |
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| T |
53147008 |
cataaagatcataagaaaattattaaactatttgcagcagtatgcaccaattctgtgccatattacaaaagtacaagatcatcaaagcataacagcccca |
53147107 |
T |
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| Q |
201 |
tcatattgtttgcccagtaagggaaccttgatcatagcactgtgtaacaatacttttcagaagcccttcagtctaccttcttaaaattatacagtttcat |
300 |
Q |
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| T |
53147108 |
ttatattgtttgcccagtaagggaaccttgatcatagcactgtgtaacaatacttttcagaagcccttcagtctaccttcttaaaaatatacagtttcat |
53147207 |
T |
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| Q |
301 |
gtagcttatagatcactactatgatttgagttactactacta |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
53147208 |
gtagcttatagatcactactatgatttgagttactactacta |
53147249 |
T |
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