View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18810_low_16 (Length: 266)

Name: NF18810_low_16
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18810_low_16
NF18810_low_16
[»] chr4 (21 HSPs)
chr4 (25-142)||(669637-669755)
chr4 (19-88)||(40723227-40723297)
chr4 (19-141)||(668386-668509)
chr4 (35-103)||(2162625-2162693)
chr4 (19-85)||(7053180-7053246)
chr4 (19-88)||(38695543-38695612)
chr4 (19-88)||(38698075-38698144)
chr4 (19-85)||(34326730-34326795)
chr4 (22-88)||(53435800-53435866)
chr4 (20-85)||(28589782-28589847)
chr4 (20-105)||(28590935-28591020)
chr4 (19-88)||(40724891-40724958)
chr4 (19-85)||(53432062-53432128)
chr4 (35-84)||(3921182-3921231)
chr4 (19-88)||(13533307-13533376)
chr4 (19-84)||(54485596-54485661)
chr4 (35-83)||(42872351-42872399)
chr4 (19-68)||(22069235-22069284)
chr4 (35-84)||(31968443-31968492)
chr4 (19-100)||(34328412-34328493)
chr4 (35-84)||(40792767-40792816)
[»] chr5 (19 HSPs)
chr5 (19-129)||(10977022-10977132)
chr5 (19-123)||(10978291-10978395)
chr5 (19-88)||(8523793-8523862)
chr5 (18-88)||(8521254-8521324)
chr5 (19-88)||(1009184-1009253)
chr5 (19-88)||(1010411-1010480)
chr5 (20-88)||(26047814-26047882)
chr5 (19-83)||(20538053-20538117)
chr5 (20-88)||(32757826-32757894)
chr5 (19-88)||(32759095-32759164)
chr5 (35-83)||(34899003-34899051)
chr5 (19-86)||(9169586-9169653)
chr5 (35-82)||(20539398-20539445)
chr5 (35-84)||(24503200-24503249)
chr5 (35-84)||(24509087-24509136)
chr5 (32-84)||(22049187-22049239)
chr5 (30-83)||(11846323-11846376)
chr5 (35-84)||(30857816-30857865)
chr5 (35-83)||(34894165-34894213)
[»] chr2 (18 HSPs)
chr2 (19-130)||(9472624-9472735)
chr2 (19-87)||(35061271-35061339)
chr2 (19-130)||(9474057-9474168)
chr2 (19-124)||(35903508-35903613)
chr2 (19-88)||(34513600-34513669)
chr2 (19-88)||(34147136-34147205)
chr2 (20-88)||(34512815-34512883)
chr2 (19-123)||(35904755-35904859)
chr2 (18-88)||(33995947-33996016)
chr2 (20-88)||(7753573-7753640)
chr2 (19-87)||(35061364-35061431)
chr2 (19-88)||(2276281-2276350)
chr2 (19-88)||(34148407-34148476)
chr2 (39-88)||(30749340-30749389)
chr2 (35-88)||(37956965-37957018)
chr2 (39-76)||(16289797-16289834)
chr2 (45-85)||(2277519-2277559)
chr2 (19-79)||(37956918-37956978)
[»] chr1 (18 HSPs)
chr1 (19-124)||(15746777-15746882)
chr1 (19-88)||(48097078-48097147)
chr1 (19-103)||(46468751-46468835)
chr1 (19-88)||(15743276-15743345)
chr1 (19-88)||(42244631-42244700)
chr1 (35-87)||(835261-835313)
chr1 (19-98)||(46467146-46467225)
chr1 (19-108)||(20064176-20064265)
chr1 (22-123)||(20069899-20070000)
chr1 (19-124)||(46318628-46318733)
chr1 (35-83)||(836245-836293)
chr1 (35-87)||(51042390-51042442)
chr1 (19-88)||(42245934-42246003)
chr1 (38-84)||(44276141-44276187)
chr1 (43-84)||(30535720-30535761)
chr1 (20-88)||(7161406-7161474)
chr1 (20-88)||(10722425-10722493)
chr1 (19-83)||(49801617-49801681)
[»] chr3 (13 HSPs)
chr3 (18-88)||(28909652-28909722)
chr3 (19-102)||(3455658-3455741)
chr3 (19-88)||(43173886-43173955)
chr3 (20-88)||(20288271-20288339)
chr3 (20-88)||(9338483-9338551)
chr3 (19-70)||(20336693-20336744)
chr3 (20-88)||(43174753-43174821)
chr3 (35-84)||(3208500-3208549)
chr3 (19-70)||(20314800-20314851)
chr3 (35-84)||(3209982-3210031)
chr3 (35-84)||(38247527-38247576)
chr3 (27-87)||(5122309-5122369)
chr3 (36-84)||(23443508-23443556)
[»] scaffold2071 (1 HSPs)
scaffold2071 (19-88)||(728-797)
[»] chr8 (17 HSPs)
chr8 (43-139)||(45396014-45396109)
chr8 (19-88)||(38696308-38696377)
chr8 (19-88)||(42878863-42878932)
chr8 (19-88)||(38697053-38697122)
chr8 (19-85)||(41743665-41743731)
chr8 (35-84)||(17702326-17702375)
chr8 (21-70)||(45396113-45396162)
chr8 (19-88)||(45437529-45437598)
chr8 (19-88)||(42877619-42877688)
chr8 (20-88)||(45394968-45395036)
chr8 (19-88)||(28734988-28735057)
chr8 (36-84)||(26697883-26697931)
chr8 (43-88)||(14840946-14840991)
chr8 (35-84)||(26696548-26696597)
chr8 (31-76)||(28291424-28291469)
chr8 (35-84)||(32693846-32693895)
chr8 (39-84)||(34504691-34504736)
[»] scaffold0011 (2 HSPs)
scaffold0011 (19-88)||(127433-127502)
scaffold0011 (19-88)||(128638-128707)
[»] scaffold1251 (1 HSPs)
scaffold1251 (19-124)||(1096-1201)
[»] chr7 (16 HSPs)
chr7 (19-88)||(35140-35209)
chr7 (19-124)||(25533188-25533293)
chr7 (19-88)||(27754-27823)
chr7 (19-88)||(38539671-38539740)
chr7 (19-88)||(46201132-46201200)
chr7 (19-88)||(9662283-9662352)
chr7 (19-88)||(46202330-46202399)
chr7 (32-84)||(30311520-30311572)
chr7 (31-98)||(666738-666805)
chr7 (19-82)||(4974105-4974168)
chr7 (35-77)||(10942310-10942352)
chr7 (35-84)||(45455423-45455472)
chr7 (39-84)||(47060526-47060571)
chr7 (31-83)||(3414886-3414938)
chr7 (32-84)||(43459468-43459520)
chr7 (35-83)||(47059124-47059172)
[»] chr6 (4 HSPs)
chr6 (19-88)||(7308494-7308563)
chr6 (28-88)||(16208533-16208593)
chr6 (35-83)||(35037149-35037197)
chr6 (35-84)||(6452562-6452611)
[»] scaffold0004 (1 HSPs)
scaffold0004 (18-89)||(334149-334221)
[»] scaffold0001 (1 HSPs)
scaffold0001 (18-89)||(44856-44928)
[»] scaffold0013 (1 HSPs)
scaffold0013 (23-86)||(32576-32639)
[»] scaffold0201 (1 HSPs)
scaffold0201 (42-83)||(21150-21191)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 669755 - 669637
Alignment:
Q  25 aggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgt-ccgtcagtcaaa 123  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||| | || ||||| ||||||||| || ||||||||||||    
T  669755 aggtcatttggtcccccaattaattttcaattttcattttggtcccataattaataaaactcacattttggtccctcaattataggtcccgtcagtcaaa 669656  T
Q  124 ttggtccattccgttaatg 142  Q
    |||||||| ||| ||||||    
T  669655 ttggtccactccattaatg 669637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 40723227 - 40723297
Alignment:
Q  19 cttaataggtcatttagtcccctaattaatttt-caattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40723227 cttaataggtcatttggtcccctaattaattttgcaattttcattttggtcccataactaataaaactcat 40723297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 668386 - 668509
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    ||||||| |||||||  ||| | |||||||||||| |||||||||||||| ||||||||||||||||||   || |||||  ||||| |||||||||||     
T  668386 cttaataagtcatttgatcctccaattaattttcagttttcattttggtctcataactaataaaactcacgttttggtcccccaattttacgtccgtcat 668485  T
Q  119 tcaaattggt-ccattccgttaat 141  Q
    |||||||||| |||||||||||||    
T  668486 tcaaattggtcccattccgttaat 668509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 2162625 - 2162693
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaa 103  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||||||||||| || ||||| ||||    
T  2162625 gtcctctaattaattttcagttttcattttagtcccataactaataaaactcatattttggtccctcaa 2162693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 7053180 - 7053246
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaact 85  Q
    |||||||||||||||  |||||||||||||||||| ||| ||||||||| |||||| ||||||||||    
T  7053180 cttaataggtcattttttcccctaattaattttcagtttacattttggttccataattaataaaact 7053246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 38695543 - 38695612
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||| |||| ||||| ||| ||||||||||||||||||||| ||||||| ||||||||| ||||    
T  38695543 cttaataggttatttggtcccttaaataattttcaattttcattttgatcccatatctaataaaaatcat 38695612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 38698144 - 38698075
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||  ||| |||||| |||||||||||||||||||||| ||||||||| ||||    
T  38698144 cttaataggtcatttggtcctttaaataatttccaattttcattttggtcccatatctaataaaagtcat 38698075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 34326730 - 34326795
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaact 85  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| ||  |||||||| ||||||||||    
T  34326730 cttaataggtcatttggtcccctaattaatttttaattttcatcttaatcccataa-taataaaact 34326795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 53435866 - 53435800
Alignment:
Q  22 aataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||  |||| ||||||||||  | |||||||||||||||||||| |||||||||||||    
T  53435866 aataggtcatttgatcccttaattaatttcaagttttcattttggtcccataagtaataaaactcat 53435800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 28589782 - 28589847
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaact 85  Q
    ||||||||||||||  |||| ||| ||||||||| |||||||||||||||||||| || |||||||    
T  28589782 ttaataggtcatttgatcccttaaataattttcagttttcattttggtcccataagtattaaaact 28589847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 28591020 - 28590935
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaatt 105  Q
    ||||||||| |||| ||||| ||| |||||| ||  ||||||||||||||||||| |||||||||||||  || ||||||| ||||    
T  28591020 ttaataggttatttggtcccttaaataatttccagctttcattttggtcccataaataataaaactcatgttttggtcctttaatt 28590935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 40724958 - 40724891
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||| |||||||||| || |||| |||||| ||||  ||||||||||||||||    
T  40724958 cttaataggtcatttggtcccttaattaatttgcagtttttattttgatccc--aactaataaaactcat 40724891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 53432062 - 53432128
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaact 85  Q
    ||||||||||| |||  |||| ||||||||||  | |||||||||||||||||||| ||||||||||    
T  53432062 cttaataggtcgtttgatcccttaattaatttcaagttttcattttggtcccataagtaataaaact 53432128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 3921231 - 3921182
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||| ||||||||||||| |||||||||||||| ||||| |||||||||    
T  3921231 gtcccttaattaattttcagttttcattttggtctcataaataataaaac 3921182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 13533376 - 13533307
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| |||| |||||||||||  | ||||||| || || |||||||||| |||||||||    
T  13533376 cttaataggtcatttggtcctctaattaatttcaagttttcatcttagttccataactaaaaaaactcat 13533307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 54485661 - 54485596
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    |||||||| ||| |||||||||||| ||||||  | ||||||||||| |||||||| |||||||||    
T  54485661 cttaatagatcacttagtcccctaaataatttcaagttttcattttgatcccataattaataaaac 54485596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 42872399 - 42872351
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaa 83  Q
    |||||||||||||||  || |||||||||||||||||||| ||||||||    
T  42872399 gtcccctaattaattaccatttttcattttggtcccataattaataaaa 42872351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 22069235 - 22069284
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtc 68  Q
    |||||| ||||  |||||||||||||||||||||| |||| |||||||||    
T  22069235 cttaattggtccattagtcccctaattaattttcagtttttattttggtc 22069284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 31968492 - 31968443
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||||||||||||||| | ||||||||||||||| | || |||||||||    
T  31968492 gtcccctaattaattttaatttttcattttggtcctacaattaataaaac 31968443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 34328493 - 34328412
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtcctt 100  Q
    ||||||| || |||| |||| ||||||||||||||  ||| ||||| ||| ||||| |||||||| |||| ||| |||||||    
T  34328493 cttaataagttatttggtccgctaattaattttcagattttattttagtctcataattaataaaattcatgctttggtcctt 34328412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 40792767 - 40792816
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    |||| |||||||||||| | ||||||||||||||||| || |||||||||    
T  40792767 gtcctctaattaattttaagttttcattttggtcccacaattaataaaac 40792816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 10977022 - 10977132
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    |||||||||||||||  ||||||||||||||| |||||||||| ||||||| |||||||||||||| ||   |||||||| |||||| ||||||||||||    
T  10977022 cttaataggtcatttgatcccctaattaatttgcaattttcatcttggtcctataactaataaaacccacgtttcggtccctcaattttacgtccgtcag 10977121  T
Q  119 tcaaattggtc 129  Q
    |||||||||||    
T  10977122 tcaaattggtc 10977132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 10978395 - 10978291
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    |||||||| |||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||| ||   |||||||| |||||||||||||||||||    
T  10978395 cttaatagatcatttggtcccctaattaatttccaattttcattttggtcctataaataataaaacccacgtttcggtccctcaattatacgtccgtcag 10978296  T
Q  119 tcaaa 123  Q
    |||||    
T  10978295 tcaaa 10978291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 8523862 - 8523793
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  8523862 cttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaataaaactcat 8523793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 8521254 - 8521324
Alignment:
Q  18 acttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||||||| ||||| ||||||||||  | ||||||||||||||||||||||||||||||||||    
T  8521254 acttaataggtcatttggtcccttaattaatttcaagttttcattttggtcccataactaataaaactcat 8521324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 1009184 - 1009253
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| || |||||||||||||  | ||||||||||||| ||||||||||||||||||||    
T  1009184 cttaataggtcatttggttccctaattaatttcaagttttcattttggttccataactaataaaactcat 1009253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 1010480 - 1010411
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||| ||||||||||  | |||| |||||||||||||||||||||||||||||    
T  1010480 cttaataggtcatttggtcccttaattaatttcaagtttttattttggtcccataactaataaaactcat 1010411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 26047814 - 26047882
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||||| |||| |||||||||||  |||||| ||||||||| |||||||||||||||||||    
T  26047814 ttaataggtcatttggtcctctaattaatttcaaatttttattttggtctcataactaataaaactcat 26047882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 20538053 - 20538117
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaa 83  Q
    ||||||||||  ||| ||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  20538053 cttaataggttttttggtcccctaattaatttcaaattttcattttggtcccataattaataaaa 20538117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 32757826 - 32757894
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||||| |||||  || |||||| || |||||||||||||||||||| |||||||||||||    
T  32757826 ttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataaataataaaactcat 32757894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 32759164 - 32759095
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| |||||  || ||||||||| |||||||||| || |||||| |||||||||||||    
T  32759164 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcat 32759095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 34899051 - 34899003
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaa 83  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  34899051 gtcccttaattaattttcatttttcattttggtcccataagtaataaaa 34899003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 9169586 - 9169653
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactc 86  Q
    ||||||||||||||| | ||| ||||||||||  | |||||||||| ||||||||| |||||||||||    
T  9169586 cttaataggtcatttggccccttaattaatttcaagttttcattttagtcccataattaataaaactc 9169653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 20539445 - 20539398
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaa 82  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||    
T  20539445 gtcccctaattaattttaaattttcattttggtcccattattaataaa 20539398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 24503200 - 24503249
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||| |||||||||  ||||||||||||||||||||||| |||||||||    
T  24503200 gtcccttaattaattaccaattttcattttggtcccataagtaataaaac 24503249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 24509136 - 24509087
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||| |||||||||  ||||||||||||||||||||||| |||||||||    
T  24509136 gtcccttaattaattaccaattttcattttggtcccataagtaataaaac 24509087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 22049239 - 22049187
Alignment:
Q  32 ttagtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    |||||||||||| ||||||  | |||||||||||||||||||| |||||||||    
T  22049239 ttagtcccctaaataatttcaagttttcattttggtcccataattaataaaac 22049187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 11846376 - 11846323
Alignment:
Q  30 atttagtcccctaattaattttcaattttcattttggtcccataactaataaaa 83  Q
    |||| ||||| |||||||||| ||  ||||||||||||| ||||||||||||||    
T  11846376 atttggtcccttaattaatttacaggtttcattttggtctcataactaataaaa 11846323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 30857816 - 30857865
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    |||| |||||||||||| | ||||||||||||||||| || |||||||||    
T  30857816 gtcctctaattaattttaagttttcattttggtcccacaattaataaaac 30857865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 34894165 - 34894213
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaa 83  Q
    ||||| |||||||||| || |||||||||||||||| ||| ||||||||    
T  34894165 gtcccttaattaatttccatttttcattttggtcccgtaagtaataaaa 34894213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 9472624 - 9472735
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    |||||||||||||||  ||||||||||||||| ||||||| |||||||||| |||||| ||||||| ||   |||||||| |||||||||||| ||||||    
T  9472624 cttaataggtcatttgatcccctaattaatttgcaatttttattttggtcctataacttataaaacccacgtttcggtccctcaattatacgttcgtcag 9472723  T
Q  119 tcaaattggtcc 130  Q
    ||||||||||||    
T  9472724 tcaaattggtcc 9472735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 35061271 - 35061339
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactca 87  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35061271 cttaataggtcatttaatcccctaattaattttcagttttcattttggtcccataactaataaaactca 35061339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 9474168 - 9474057
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |||| |||| ||   |||||||  ||||||||||||| |||||    
T  9474168 cttaataggtcatttggtcccctaattaattttcaattttcattttgttcctataaataatgaaacccacgtttcggtcactcaattatacgtctgtcag 9474069  T
Q  119 tcaaattggtcc 130  Q
    ||||| ||||||    
T  9474068 tcaaagtggtcc 9474057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 35903508 - 35903613
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    ||||||||||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||||| ||||  || ||||| |||||||||  ||||||||    
T  35903508 cttaataggtcatttggtcctttaattaatttcaagttttcattttggtcccataactaataaaagtcatgttttggtccctcaattatatctccgtcag 35903607  T
Q  119 tcaaat 124  Q
    ||||||    
T  35903608 tcaaat 35903613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 34513669 - 34513600
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||| |||||| |||||||||||||    
T  34513669 cttaataggtcatttggtcccctaattaattaccaattttcattttggttccataattaataaaactcat 34513600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 34147136 - 34147205
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| |||||  || ||||||||| |||||||||||||||||||| |||||||||||||    
T  34147136 cttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaactcat 34147205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 34512815 - 34512883
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||| |||| |||||||||||||||  || |||||||||||||||||||| |||||||||||||    
T  34512815 ttaataggttatttggtcccctaattaattaccagttttcattttggtcccataattaataaaactcat 34512883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 35904859 - 35904755
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    ||||||||||||||||||||  ||| ||||||  |||||||||||||| ||||||| |||||||||||||  || ||||||| |||| |   ||||||||    
T  35904859 cttaataggtcatttagtcctttaaataatttctaattttcattttggccccataagtaataaaactcatgttttggtcctttaattctgtctccgtcag 35904760  T
Q  119 tcaaa 123  Q
    |||||    
T  35904759 tcaaa 35904755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 33995947 - 33996016
Alignment:
Q  18 acttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||||||| ||||| ||||||||||| | |||||||||| || ||||||||||||||||||||    
T  33995947 acttaataggtcatttggtcccttaattaattttaagttttcatttttgt-ccataactaataaaactcat 33996016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 7753640 - 7753573
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||||| |||||| |||| ||||||||    
T  7753640 ttaataggtcatttggtcccctaattaatttcaaattttcattttggt-ccataattaattaaactcat 7753573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 35061431 - 35061364
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactca 87  Q
    ||||||||||||||| ||||| ||||||||||  | ||||||||||||| |||||||||||||||||||    
T  35061431 cttaataggtcatttggtcccttaattaatttgaagttttcattttggt-ccataactaataaaactca 35061364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 2276281 - 2276350
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| |||||  || ||||||||| |||||||||| |||| |||| |||||||||||||    
T  2276281 cttaataggtcatttggtccctcaaataattttcagttttcattttagtcctataagtaataaaactcat 2276350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 34148476 - 34148407
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| |||||  || ||||||||| |||||||||| || |||||| |||||||||||||    
T  34148476 cttaataggtcatttggtccctcaaataattttcagttttcattttagttccataaataataaaactcat 34148407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 30749389 - 30749340
Alignment:
Q  39 cctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||| || |||||||||| ||||||||| |||||||||||||    
T  30749389 cctaattaatttccagttttcattttagtcccataattaataaaactcat 30749340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 37956965 - 37957018
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||| ||||||||||  |||||||||||||||||||||| |||||||| ||||    
T  37956965 gtcccttaattaatttcaaattttcattttggtcccataagtaataaaattcat 37957018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 16289797 - 16289834
Alignment:
Q  39 cctaattaattttcaattttcattttggtcccataact 76  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  16289797 cctaattaattttcagttttcattttggtctcataact 16289834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 2277559 - 2277519
Alignment:
Q  45 taattttcaattttcattttggtcccataactaataaaact 85  Q
    |||||| || |||||||||||||||||||| ||||||||||    
T  2277559 taatttccagttttcattttggtcccataagtaataaaact 2277519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 37956918 - 37956978
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaat 79  Q
    ||||||||||||||| ||| | ||||||||||  |||||| ||||||||||| ||| ||||    
T  37956918 cttaataggtcatttggtctcttaattaatttcaaatttttattttggtcccttaattaat 37956978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 15746882 - 15746777
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||  || ||||| | |||| ||  ||||||||    
T  15746882 cttaataggtcatttggtcccctaattaatttccaattttcattttggtcccataagtaataaaactcatgttttggtcccttaattgtatctccgtcag 15746783  T
Q  119 tcaaat 124  Q
    ||||||    
T  15746782 tcaaat 15746777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 48097147 - 48097078
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  48097147 cttaataggtcatttagtcctctaattaatttccaatttttattttggtcccataactaataaaactcat 48097078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 46468835 - 46468751
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaa 103  Q
    ||||||||||||||| || |  ||||||||||  |||||| |||||||||||||||||||||||||||||  |||||||| ||||    
T  46468835 cttaataggtcatttggttctttaattaatttcaaatttttattttggtcccataactaataaaactcatgtttcggtccatcaa 46468751  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 15743276 - 15743345
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||| |||| |||| ||||||||||| ||||||| ||||||||| ||||| |||||||||||||    
T  15743276 cttaataggttatttggtcctctaattaatttccaatttttattttggtctcataagtaataaaactcat 15743345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 42244631 - 42244700
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||  ||||||||||  ||||||||||||| |||||||| |||||||||||||    
T  42244631 cttaataggtcatttggtcctttaattaatttcaaattttcattttgatcccataattaataaaactcat 42244700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 835261 - 835313
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaactca 87  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  835261 gtcccctaattaatttgcagttttcattttggtctcataactaataaaactca 835313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 46467146 - 46467225
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtcc 98  Q
    |||||||||||| ||  |||  ||||||||||  | ||||||||||||||||||||||||||||||||||  ||||||||    
T  46467146 cttaataggtcaattgatcctttaattaatttcaagttttcattttggtcccataactaataaaactcatgtttcggtcc 46467225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 20064176 - 20064265
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattata 108  Q
    |||||||| |||||| |||||  ||||||||| |  ||||||||||||||||||| |||||||||| ||   || |||||||||||||||    
T  20064176 cttaatagctcatttggtccctcaattaatttcccgttttcattttggtcccatatctaataaaacacacgttttggtccttcaattata 20064265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 20070000 - 20069899
Alignment:
Q  22 aataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcagtca 121  Q
    ||||| |||||| |||||  ||||||||| |  |||||||||||||| |||| |||||||||| |||  || |||||||||||||||  |||||| ||||    
T  20070000 aatagctcatttggtccctcaattaatttcccgttttcattttggtctcatatctaataaaacacatgttttggtccttcaattataactccgtcggtca 20069901  T
Q  122 aa 123  Q
    ||    
T  20069900 aa 20069899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 46318733 - 46318628
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    ||||||||||||||| ||||  ||||||||||  | |||| ||||| |||||||||||||||||| ||||  || ||||| |||||| ||  |||||| |    
T  46318733 cttaataggtcatttggtcctttaattaatttcaagttttgatttttgtcccataactaataaaagtcatgttttggtccctcaattgtatctccgtctg 46318634  T
Q  119 tcaaat 124  Q
    ||||||    
T  46318633 tcaaat 46318628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 836293 - 836245
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaa 83  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  836293 gtcctctaattaattttcagttttcattttggtctcataactaataaaa 836245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 51042442 - 51042390
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaactca 87  Q
    ||||| |||||||||| |||||||||||||||||||| || ||||||||||||    
T  51042442 gtcccttaattaatttccaattttcattttggtcccacaattaataaaactca 51042390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 42246003 - 42245934
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||| ||||||| |||| ||||||||||  | |||| |||||||| |||||| |||||||||||||    
T  42246003 cttaatagatcatttaatcccttaattaatttcaagtttttattttggttccataattaataaaactcat 42245934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 44276141 - 44276187
Alignment:
Q  38 ccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||||||||||| || |||||||||||||| ||||| |||||||||    
T  44276141 ccctaattaatttccatttttcattttggtctcataattaataaaac 44276187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 30535761 - 30535720
Alignment:
Q  43 attaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||||||||| ||||||||||||| |||||| |||||||||    
T  30535761 attaattttcagttttcattttggttccataattaataaaac 30535720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 7161474 - 7161406
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||  |||| ||||||||||  |||||| |||||| || ||||| |||||||| ||||    
T  7161474 ttaataggtcatttgttcccttaattaatttcaaatttttattttgatctcataagtaataaaattcat 7161406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 10722493 - 10722425
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||| || |||| ||| ||||||||||||  | |||||||||| ||| |||||||| ||||||||||    
T  10722493 ttaataagttatttggtctcctaattaatttcaagttttcattttcgtctcataactagtaaaactcat 10722425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 49801617 - 49801681
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaa 83  Q
    |||| ||| |||||| ||||| || ||||||||  |||||||||||||||||| || ||||||||    
T  49801617 cttattagatcatttggtcccttatttaattttatattttcattttggtcccacaattaataaaa 49801681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 28909722 - 28909652
Alignment:
Q  18 acttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28909722 acttaataggtcattcagtcctctaattaattttcagttttcattttggtcccataactaataaaactcat 28909652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 3455741 - 3455658
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttca 102  Q
    ||||||||||||||| |||||| |||||||||  | |||||||||||||| |||||||||||||||||||  || |||||||||    
T  3455741 cttaataggtcatttggtccccgaattaatttcaagttttcattttggtctcataactaataaaactcatgttttggtccttca 3455658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 43173886 - 43173955
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||  |||||||||||||||| ||||    
T  43173886 cttaataggtcatttgatcccctaattaatttccaattttcattttgtccccataactaataaaattcat 43173955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 20288339 - 20288271
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| |||||||||||||    
T  20288339 ttaataggccatttggtcccctaattaatttttagttttcattttgatcccataattaataaaactcat 20288271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 9338551 - 9338483
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||||||| || |||||||||||||||| ||||| ||  ||||| |||||||||||||    
T  9338551 ttaataggtcatttagtcctctgattaattttcaattttaattttagtttcataattaataaaactcat 9338483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 20336744 - 20336693
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtccc 70  Q
    |||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  20336744 cttactaggtcatttggtcccctaattaattttcagttttcattttggtccc 20336693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 43174821 - 43174753
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||| ||||||| ||||| || |||||||| | |||||||||||  |||||||||||||||||||||    
T  43174821 ttaatatgtcatttggtcccttatttaattttaagttttcattttgaccccataactaataaaactcat 43174753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 3208500 - 3208549
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    |||| ||||||||||| || |||||||||||||||||||| |||||||||    
T  3208500 gtcctctaattaatttccatttttcattttggtcccataattaataaaac 3208549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 20314851 - 20314800
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtccc 70  Q
    |||||||| ||||||  ||||||||||||||||||  |||||||||||||||    
T  20314851 cttaatagatcatttgatcccctaattaattttcagctttcattttggtccc 20314800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 3210031 - 3209982
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||| ||| ||||||| ||||||||||||||||||| || |||||||||    
T  3210031 gtcccttaaataattttaaattttcattttggtcccacaattaataaaac 3209982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 38247576 - 38247527
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||| |||||||||| |||||||||||||||||  |||| |||||||||    
T  38247576 gtcccttaattaatttccaattttcattttggtcatataagtaataaaac 38247527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 5122309 - 5122369
Alignment:
Q  27 gtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactca 87  Q
    ||||||| |||| | ||||||||| || ||||||||||| | |||||| ||||||||||||    
T  5122309 gtcatttggtcctccaattaatttccatttttcattttgcttccataattaataaaactca 5122369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 23443556 - 23443508
Alignment:
Q  36 tcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    |||| ||||||||||| | ||||||||||||||||| || |||||||||    
T  23443556 tcccttaattaattttaacttttcattttggtcccaaaattaataaaac 23443508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 797 - 728
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  797 cttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataactaataaaactcat 728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 45396109 - 45396014
Alignment:
Q  43 attaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcagtcaaattggtccattccgtta 139  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||   |||||||  | || ||||||||||||||||||||||||||| |||||||    
T  45396109 attaattttcagttttcattttggtcccataactaaaaaaactcacgtttcggtcacttaa-tatacgtccgtcagtcaaattggtccactccgtta 45396014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 38696308 - 38696377
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||| ||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||    
T  38696308 cttaataggccatttggtcccctaattaattttaagttttcattttggtctcataactaataaaactcat 38696377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 42878932 - 42878863
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||| ||||||||    
T  42878932 cttaataggtcatttggtcccctaattaatttcaagttttcattttggtcccataactaatgaaactcat 42878863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 38697122 - 38697053
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||| |||||| |||||  ||||||||| || ||||||||||||||||||||||||||||||||||    
T  38697122 cttaatagctcatttggtccctcaattaatttccagttttcattttggtcccataactaataaaactcat 38697053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 41743731 - 41743665
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaact 85  Q
    ||||||||||||||| ||||  ||||||||||| | |||||||||||||||||||| ||||||||||    
T  41743731 cttaataggtcatttggtcctttaattaattttaagttttcattttggtcccataagtaataaaact 41743665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 17702375 - 17702326
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  17702375 gtcccttaattaatttccaattttcattttggtcccataactaataaaac 17702326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 45396162 - 45396113
Alignment:
Q  21 taataggtcatttagtcccctaattaattttcaattttcattttggtccc 70  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  45396162 taataggtcatttggtcccccaattaattttcaattttcattttggtccc 45396113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 45437598 - 45437529
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||||||  |||||||||||||||  | ||||||||||| |||||||| |||||||||||||    
T  45437598 cttaataggtcatttgatcccctaattaatttcaagttttcattttgatcccataattaataaaactcat 45437529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 42877619 - 42877688
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||| |||| ||| | ||||||||||  | |||||||||||||| |||||||||||||||||||    
T  42877619 cttaataggttatttggtctcttaattaatttcaagttttcattttggtctcataactaataaaactcat 42877688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 45394968 - 45395036
Alignment:
Q  20 ttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||| ||||||  |||| ||||||||||| | ||||||||||| |||||||| |||||||||||||    
T  45394968 ttaatagatcatttgatcccttaattaattttaagttttcattttgatcccataattaataaaactcat 45395036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 28734988 - 28735057
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||||||  |  ||||||||||||| | | ||||||||||| |||||| |||||||||||||    
T  28734988 cttaataggtcatttgatttcctaattaattttaagtgttcattttggttccataattaataaaactcat 28735057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 26697931 - 26697883
Alignment:
Q  36 tcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||||||||| |||||| |||||||||| ||||||||| |||||||||    
T  26697931 tcccctaattatttttcatttttcattttagtcccataattaataaaac 26697883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 14840991 - 14840946
Alignment:
Q  43 attaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||  ||||||||||||||| ||||||||||||||| ||||    
T  14840991 attaatttcaaattttcattttggtaccataactaataaaattcat 14840946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 26696548 - 26696597
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||||||||||||||  | ||||||||||||||||| || |||||||||    
T  26696548 gtcccctaattaatttcaagttttcattttggtcccacaattaataaaac 26696597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 28291469 - 28291424
Alignment:
Q  31 tttagtcccctaattaattttcaattttcattttggtcccataact 76  Q
    ||||||||||||| ||||| ||| |||||| |||||||||||||||    
T  28291469 tttagtcccctaaataattatcagttttcactttggtcccataact 28291424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 32693846 - 32693895
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    |||| |||||||||||| | ||||||||||||||||| || |||||||||    
T  32693846 gtcctctaattaattttaagttttcattttggtcccacaattaataaaac 32693895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 34504736 - 34504691
Alignment:
Q  39 cctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||||||||||||| |||| ||||| ||| |||||||||||||||    
T  34504736 cctaattaattttcagtttttattttagtctcataactaataaaac 34504691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 127433 - 127502
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||||||||||||||  | ||||| ||||||||||||||||||||||||||||    
T  127433 cttaataggtcatttggtcccctaattaatttcaagttttcgttttggtcccataactaataaaactcat 127502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 128707 - 128638
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||| ||||||||||| | ||||||||||||||| || |||||||||||||||    
T  128707 cttaataggtcatttggtcccttaattaattttaagttttcattttggtcctattactaataaaactcat 128638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 1201 - 1096
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    ||||||||||||||| |||||  || |||||| || |||||||||||||||||||| |||||||||||||  || ||||| |||| |  || ||||||||    
T  1201 cttaataggtcatttggtccctcaaataatttccagttttcattttggtcccataagtaataaaactcatgttttggtccctcaaattcacctccgtcag 1102  T
Q  119 tcaaat 124  Q
    ||||||    
T  1101 tcaaat 1096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 35209 - 35140
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||||||||||||| ||||||||| ||||    
T  35209 cttaataggtcatttggtcccttaaataatttccaattttcattttggtcccatatctaataaaagtcat 35140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 25533188 - 25533293
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtccttcaattatacgtccgtcag 118  Q
    ||||||| ||||||| ||| | ||||||||||  | ||||||||||||||||||||||||||||| ||||  || |||||||||||| ||  |||||| |    
T  25533188 cttaataagtcatttggtctcttaattaatttcaagttttcattttggtcccataactaataaaattcatgttttggtccttcaattgtatctccgtcgg 25533287  T
Q  119 tcaaat 124  Q
    ||||||    
T  25533288 tcaaat 25533293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 27754 - 27823
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||||||| ||||| ||||||||| ||||    
T  27754 cttaataggtcatttggtcccttaaataatttccaattttcattttggttccatatctaataaaagtcat 27823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 38539671 - 38539740
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||||||||||||  |||| ||||||||||  | |||||||||||||||||||| |||||||||||||    
T  38539671 cttaataggtcatttgatcccttaattaatttcaagttttcattttggtcccataaataataaaactcat 38539740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 46201132 - 46201200
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||| ||||||||| ||| | |||| |||||||| |||||||||||||||||||| |||||||||||||    
T  46201132 cttaagaggtcatttggtctcataat-aattttcagttttcattttggtcccataagtaataaaactcat 46201200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 9662352 - 9662283
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| |||| |||||||||||  | ||||||| || || |||||||||| |||||||||    
T  9662352 cttaataggtcatttggtcctctaattaatttcaagttttcatcttagttccataactaaaaaaactcat 9662283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 46202399 - 46202330
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||| |||  |||| ||| |||||| || ||||||||||| |||||||| |||||||||||||    
T  46202399 cttaataggtcgtttgatcccttaaataatttacagttttcattttgatcccataagtaataaaactcat 46202330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 30311572 - 30311520
Alignment:
Q  32 ttagtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    |||||||||||| ||||||  ||||||||||||||||||| || |||||||||    
T  30311572 ttagtcccctaaataatttcaaattttcattttggtcccacaattaataaaac 30311520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 666738 - 666805
Alignment:
Q  31 tttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcatacttcggtcc 98  Q
    ||||||||||||| ||||| ||| ||||||||||| || ||||||| |||||| | ||| ||||||||    
T  666738 tttagtcccctaaataattatcagttttcattttgatctcataactcataaaattaatatttcggtcc 666805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 4974168 - 4974105
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaa 82  Q
    |||||||| |||||||||||| ||||| |||||||||||||| |||| || | |||||| ||||    
T  4974168 cttaatagatcatttagtcccttaatttattttcaattttcaatttgatctcttaactattaaa 4974105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 10942352 - 10942310
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataacta 77  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||    
T  10942352 gtcccttaattaattttcagttttcattttgatcccataacta 10942310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 45455472 - 45455423
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||| ||||||||||  ||||||||||||||||||| || |||||||||    
T  45455472 gtcccttaattaatttcaaattttcattttggtcccacaattaataaaac 45455423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 47060571 - 47060526
Alignment:
Q  39 cctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||||||||||| | ||||||||||||||| |||| |||||||||    
T  47060571 cctaattaattttaagttttcattttggtcctataattaataaaac 47060526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 3414938 - 3414886
Alignment:
Q  31 tttagtcccctaattaattttcaattttcattttggtcccataactaataaaa 83  Q
    ||||||||||||| ||||||    |||||||||||||||||||| ||||||||    
T  3414938 tttagtcccctaaataatttcatgttttcattttggtcccataattaataaaa 3414886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 43459468 - 43459520
Alignment:
Q  32 ttagtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    |||||||||||| ||||||  | ||||||||||||||||| || |||||||||    
T  43459468 ttagtcccctaaataatttcaagttttcattttggtcccacaattaataaaac 43459520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 47059124 - 47059172
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaa 83  Q
    ||||||||||||||||| | ||||||||||||||| | || ||||||||    
T  47059124 gtcccctaattaattttaagttttcattttggtcctacaattaataaaa 47059172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 7308563 - 7308494
Alignment:
Q  19 cttaataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    ||||||||||||||| | ||| ||||||||||  | ||||||||||||||| |||| |||||||||||||    
T  7308563 cttaataggtcatttggccccttaattaatttcaagttttcattttggtcctataagtaataaaactcat 7308494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 16208533 - 16208593
Alignment:
Q  28 tcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactcat 88  Q
    |||||| ||||| ||| |||||||||||||| |||||||||||||| ||||||||| ||||    
T  16208533 tcatttggtcccttaaataattttcaatttttattttggtcccatatctaataaaagtcat 16208593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 35037149 - 35037197
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaa 83  Q
    |||| |||||||||||||| |||||||||||||| ||||||| ||||||    
T  35037149 gtcctctaattaattttcagttttcattttggtctcataactcataaaa 35037197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 6452611 - 6452562
Alignment:
Q  35 gtcccctaattaattttcaattttcattttggtcccataactaataaaac 84  Q
    ||||||||| ||||||  | |||||||||||||||||||| |||||||||    
T  6452611 gtcccctaaataatttcaagttttcattttggtcccataattaataaaac 6452562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 334221 - 334149
Alignment:
Q  18 acttaataggtcatttag-tcccctaattaattttcaattttcattttggtcccataactaataaaactcata 89  Q
    |||||||||||||||| | ||||| |||||||||  | |||||||||| || |||||||||||||||||||||    
T  334221 acttaataggtcattttgatccccaaattaatttcaagttttcattttagttccataactaataaaactcata 334149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 44928 - 44856
Alignment:
Q  18 acttaataggtcatttag-tcccctaattaattttcaattttcattttggtcccataactaataaaactcata 89  Q
    |||||||||||||||| | ||||| |||||||||  | |||||||||| || |||||||||||||||||||||    
T  44928 acttaataggtcattttgatccccaaattaatttcaagttttcattttagttccataactaataaaactcata 44856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 32576 - 32639
Alignment:
Q  23 ataggtcatttagtcccctaattaattttcaattttcattttggtcccataactaataaaactc 86  Q
    |||||| |||| ||||| ||||||||||  | |||| ||||||||| |||||||||||||||||    
T  32576 ataggttatttggtcccgtaattaatttcaagtttttattttggtcacataactaataaaactc 32639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 21150 - 21191
Alignment:
Q  42 aattaattttcaattttcattttggtcccataactaataaaa 83  Q
    |||||||||||| |||||||||| ||||||||| ||||||||    
T  21150 aattaattttcatttttcattttagtcccataattaataaaa 21191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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