View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18810_low_2 (Length: 700)
Name: NF18810_low_2
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18810_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 61 - 388
Target Start/End: Complemental strand, 9871149 - 9870827
Alignment:
| Q |
61 |
tcacttgtcaaagcttcttagacttgaactcttttttctaaaggaaaattatttttggtatgccgataactcttgtgctgtatcaatttttccctttaaa |
160 |
Q |
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||||||||||||||||||||||||||||||||||| | ||| || ||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9871149 |
tcacttgtcaaagcttcttagacttgaactcttttctttaatt-----tttttttttctataccgataactcttgtgctgtatcaatttttccctttaaa |
9871055 |
T |
|
| Q |
161 |
ctattgacgatgacatatatatttgaccttggagttattgtttatacttataatgttttttaaaacattatataactaaataaaaaccatgtaggtcgaa |
260 |
Q |
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| T |
9871054 |
ctattgacgatgacatataaatttgaccttggaattattgtttatacttataatgttttttaaaacattatataactaaataaaaaccatgtaggtcgaa |
9870955 |
T |
|
| Q |
261 |
attgaaatcgacatatctaaaagaatatagtaggaatcattttgctttgttgatgtaatttacagttcacatttatattcgcatgataatctacggtcat |
360 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9870954 |
attgaaatcgacatgtctaaaagaatatagtaggaatcattttgctttgttgatgtaatttacagttcacatttatattcgcatgataatctacggtcat |
9870855 |
T |
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| Q |
361 |
acgtaagaactagcagtaggaacataaa |
388 |
Q |
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| T |
9870854 |
acgtaagaactagcagtaggaacataaa |
9870827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 112 - 386
Target Start/End: Complemental strand, 9876642 - 9876367
Alignment:
| Q |
112 |
tttttggtatgccgataactcttgtgctgtatcaatttttccctttaaactattgacgatgacatatatatttgaccttggagttattgtttatacttat |
211 |
Q |
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||||||||||| |||||||||||||| | |||||| |||||||||||||||| || | |||| |||||||||||||||||| |||| ||||| | || |
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| T |
9876642 |
tttttggtatgtcgataactcttgtgatatatcaacgtttccctttaaactatagaaggtgacgtatatatttgaccttggaagtattctttatccaaat |
9876543 |
T |
|
| Q |
212 |
aatgttttttaaaacattatataactaaataaaaaccatgtaggtcgaaattgaaatcgacatatctaaaagaatatagtaggaatcattttg-ctttgt |
310 |
Q |
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|||||||||||||||||||||||| || |||||| ||||||||||| | |||||||| ||||| ||||||||| ||||||||||||||||||| |||||| |
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| T |
9876542 |
aatgttttttaaaacattatataagtagataaaatccatgtaggtccatattgaaatggacatgtctaaaagattatagtaggaatcattttgcctttgt |
9876443 |
T |
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| Q |
311 |
tgatgtaatttacagttcacatttatattcgcatgataatctacggtcatacgtaagaactagcagtaggaacata |
386 |
Q |
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| T |
9876442 |
tagtgtaatttggagttcacatttttatgcgcatgatgatatagtgtcataggtaagtactggcattaggaacata |
9876367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 444 - 556
Target Start/End: Complemental strand, 9870770 - 9870658
Alignment:
| Q |
444 |
gcatgtaccctgattgtacttatctaaactctctttctccaaggaaaaattagaagtttataccatgttaattatgttttaaaaacaataaatgttaata |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9870770 |
gcatgtaccctgattgtacttatctaaactctctttctccaaggaaaaattagaagtttataccatgttaattatgttttaaaaacggtaaatgttaata |
9870671 |
T |
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| Q |
544 |
ttatttgtgatgg |
556 |
Q |
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| T |
9870670 |
tcatttgtgatgg |
9870658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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