View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18810_low_20 (Length: 249)

Name: NF18810_low_20
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18810_low_20
NF18810_low_20
[»] chr5 (2 HSPs)
chr5 (7-240)||(17582391-17582624)
chr5 (98-188)||(34515480-34515569)
[»] chr7 (3 HSPs)
chr7 (1-240)||(14744712-14744951)
chr7 (97-184)||(29099230-29099318)
chr7 (97-173)||(41808765-41808841)
[»] chr3 (3 HSPs)
chr3 (97-240)||(51766559-51766700)
chr3 (82-174)||(50731448-50731540)
chr3 (82-174)||(50781314-50781406)
[»] chr8 (2 HSPs)
chr8 (115-215)||(10675054-10675154)
chr8 (97-165)||(12145894-12145962)
[»] chr2 (3 HSPs)
chr2 (97-192)||(36148779-36148874)
chr2 (84-172)||(36264775-36264863)
chr2 (125-172)||(40877754-40877801)
[»] chr1 (2 HSPs)
chr1 (60-190)||(46173614-46173746)
chr1 (125-174)||(47476372-47476421)
[»] chr6 (1 HSPs)
chr6 (97-150)||(7076407-7076460)
[»] chr4 (3 HSPs)
chr4 (83-174)||(26141926-26142017)
chr4 (128-190)||(44278756-44278818)
chr4 (97-174)||(32573464-32573539)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 17582391 - 17582624
Alignment:
Q  7 taatagagaaacattaaaaatggtcgcccaatttatcactgaagccgaacttgttcagaggcggacctaggtggcgacatgggaggaccgtggcctcccc 106  Q
    ||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  17582391 taatatagaaacattaaaagtggtcgcccaatctatcactaaagccgaacttgttcagaggtggacctaggtggagacatgggaggaccatggcctcccc 17582490  T
Q  107 aaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacgtcactcgtttac 206  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17582491 aaagtctcaaaaacttcatttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacatcactcgtttac 17582590  T
Q  207 actccagcacagttgtaatgcatctcgcctttga 240  Q
    ||||||||||||| ||||||||||||||||||||    
T  17582591 actccagcacagtggtaatgcatctcgcctttga 17582624  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 34515569 - 34515480
Alignment:
Q  98 ggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacat 188  Q
    |||||||||||||||||||||| ||| ||||||  || |||||||||||| ||||| |||| |||||| ||||||||  ||||||||||||    
T  34515569 ggcctccccaaagtctcaaaaatttcatttttagtagatatataaacaca-ttttatctaattgttatattatatatactaacgtttacat 34515480  T

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Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14744951 - 14744712
Alignment:
Q  1 caacgataatagagaaacattaaaaatggtcgcccaatttatcactgaagccgaacttgttcagaggcggacctaggtggcgacatgggaggaccgtggc 100  Q
    ||||| ||||| ||||||||||||| |||||||||||| |||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  14744951 caacggtaatatagaaacattaaaagtggtcgcccaatctatcactgaagttgaacttgttcggaggcggacctaggtggagacatgggaggaccatggc 14744852  T
Q  101 ctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacgtcactc 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  14744851 ctccccaaagtctcaaaaacttcatttttaacaggtatataaacatatttttacctaaatgttatgttatatattgtaacgtttacgttatacgtcactt 14744752  T
Q  201 gtttacactccagcacagttgtaatgcatctcgcctttga 240  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  14744751 gtttacactccagcacagtggtaatgcatctcgcctttga 14744712  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 29099230 - 29099318
Alignment:
Q  97 tggcctccccaaagtctcaaaaacttct-tttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgttt 184  Q
    ||||||||||||||| | ||||| |||  ||||||| ||||||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  29099230 tggcctccccaaagtttaaaaaaattccatttttaataggtatatagacacatttttaactaaatgttatgttatatatattaacgttt 29099318  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 41808765 - 41808841
Alignment:
Q  97 tggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatata 173  Q
    |||||||| ||||||||||||   ||| ||||||| |||||| || | ||||||||||||||| ||||| |||||||    
T  41808765 tggcctcctcaaagtctcaaagttttcatttttaataggtatgtatatacatttttacctaaaagttatattatata 41808841  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 51766700 - 51766559
Alignment:
Q  97 tggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacgtc 196  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||  |||||||||||| ||||||||||| |||||||| |||| |||||||| ||| |||    
T  51766700 tggcctccccaaagtctcaaaaatttcatttttaataggtata--aacacatttttagctaaatgttatattatatatagtaatgtttacatcataagtc 51766603  T
Q  197 actcgtttacactccagcacagttgtaatgcatctcgcctttga 240  Q
    |  | |||||| ||||||||||  ||||| ||||||||||||||    
T  51766602 atacatttacagtccagcacagcagtaatccatctcgcctttga 51766559  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 50731540 - 50731448
Alignment:
Q  82 gacatgggaggaccgtggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 174  Q
    ||||||||||| || || |||||| | |||||||||   ||  ||||||| |||||| || | ||||||||||||||| ||||| ||||||||    
T  50731540 gacatgggagggccatgacctcccgagagtctcaaagtttttatttttaataggtatgtatatacatttttacctaaaagttatattatatat 50731448  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 50781314 - 50781406
Alignment:
Q  82 gacatgggaggaccgtggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 174  Q
    ||||||||||| || || |||||| | |||||||||   ||  ||||||| |||||| || | ||||||||||||||| ||||| ||||||||    
T  50781314 gacatgggagggccatgacctcccgagagtctcaaagtttttatttttaataggtatgtatatacatttttacctaaaagttatattatatat 50781406  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 10675154 - 10675054
Alignment:
Q  115 aaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacgtcactcgtttacactccagc 214  Q
    ||||| ||| ||||||| |||| || | ||||||||||| ||||||||||||||||||||  |||||||| ||||||| |||||   ||||||||| |||    
T  10675154 aaaaaattcatttttaataggtgtaaatacacatttttaactaaatgttatgttatatatattaacgtttgcattataagtcacgtctttacactctagc 10675055  T
Q  215 a 215  Q
    |    
T  10675054 a 10675054  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 12145894 - 12145962
Alignment:
Q  97 tggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttat 165  Q
    |||| |||||||||| | ||||| ||| ||||||| ||||||||| |||||||||||  ||||||||||    
T  12145894 tggcatccccaaagttttaaaaaattcatttttaataggtatatatacacatttttaattaaatgttat 12145962  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 192
Target Start/End: Complemental strand, 36148874 - 36148779
Alignment:
Q  97 tggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattata 192  Q
    ||||||||||||||| | |||||   | ||||||| ||||||||| ||||| |||||  |||||||||||||||||||  |||||||| |||||||    
T  36148874 tggcctccccaaagtttaaaaaaaaacatttttaataggtatatatacacagttttaattaaatgttatgttatatatattaacgtttgcattata 36148779  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 36264863 - 36264775
Alignment:
Q  84 catgggaggaccgtggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatat 172  Q
    |||||||||  | ||||||||||||||| || |||| ||  ||||||| |||||||||   ||||||||| ||||||||||||||||||    
T  36264863 catgggagggtcatggcctccccaaagtatccaaaattttatttttaataggtatatattaacatttttagctaaatgttatgttatat 36264775  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 40877754 - 40877801
Alignment:
Q  125 tttttaacaggtatataaacacatttttacctaaatgttatgttatat 172  Q
    ||||||| || |||||| ||||||||||| ||||||||||||||||||    
T  40877754 tttttaatagttatatatacacatttttagctaaatgttatgttatat 40877801  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 46173746 - 46173614
Alignment:
Q  60 ttcagaggcggacctaggtggcgacatgggaggaccgtggcctccccaaagtctc-aaaaacttcttttttaacagg--tatataaacacatttttacct 156  Q
    |||||||||||| |||||||| |||  |||| |||| |||| |||||||| |||| |||||  || ||||||| |||  |||||||||||| ||||||||    
T  46173746 ttcagaggcggatctaggtggggactggggatgaccatggcgtccccaaaatctcaaaaaaaatcatttttaataggtatatataaacaca-ttttacct 46173648  T
Q  157 aaatgttatgttatatattgtaacgtttacatta 190  Q
    |||| |||| |||||||| || ||| ||||||||    
T  46173647 aaatattatattatatatagtgacgcttacatta 46173614  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 47476421 - 47476372
Alignment:
Q  125 tttttaacaggtatataaacacatttttacctaaatgttatgttatatat 174  Q
    ||||||| ||||||||| ||||||||||| |||||| ||||||| |||||    
T  47476421 tttttaataggtatatatacacatttttaactaaatattatgttgtatat 47476372  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 7076460 - 7076407
Alignment:
Q  97 tggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacattt 150  Q
    ||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  7076460 tggcctccccaaagtctcaaaaatttcatttttaacatgtacataaacacattt 7076407  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 26141926 - 26142017
Alignment:
Q  83 acatgggaggaccgtggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 174  Q
    |||||||||| || ||||||||| ||||||||||| | |||  |||||| |||||||||   |||||||||  || ||||||||||||||||    
T  26141926 acatgggagggccatggcctcccgaaagtctcaaacatttcaattttaataggtatatactgacatttttagttatatgttatgttatatat 26142017  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 44278818 - 44278756
Alignment:
Q  128 ttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacatta 190  Q
    |||| ||||||||||| ||||||||| ||||||||||| ||||||||  |||||||| |||||    
T  44278818 ttaataggtatataaatacatttttaactaaatgttatattatatatattaacgtttgcatta 44278756  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 32573464 - 32573539
Alignment:
Q  97 tggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 174  Q
    ||||||||| ||||||||||||| ||| ||||||| |  ||||||   ||||||| | ||||||||||||||||||||    
T  32573464 tggcctccctaaagtctcaaaaatttcatttttaata--tatatatcgacattttgagctaaatgttatgttatatat 32573539  T

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