View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18810_low_3 (Length: 642)
Name: NF18810_low_3
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18810_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 242 - 627
Target Start/End: Complemental strand, 17582161 - 17581784
Alignment:
| Q |
242 |
tgcagttaccatattggatgagaaagcaaaactcttgaaccatcattttttattttgatttaattcagatatacctttcactgtaaacannnnnnnatac |
341 |
Q |
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| T |
17582161 |
tgcagttaccatattggatgagaaagcaaaactcttgaactatcattttttattttgatttaattcagatatacctttcactgtaaacatttttttataa |
17582062 |
T |
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| Q |
342 |
cgacagtcaatcgtaacagtttgatgatgaaaactccttgcctaataaaattatcaggcaaggacagacctctcatcagtcatcataaaattatctaact |
441 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17582061 |
cgacggtcaatcgtaacagtttgatgatgaaaactccttgcctaataaaattatcaggcaaggacagacctctcatcagtcatcataaaattatctaact |
17581962 |
T |
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| Q |
442 |
tggcatatttatcaaatgaccagtgatttgtttttgttacgaaggttagcaatgattctgctacaagaagttacggtgcagtatttgatagtggcttgct |
541 |
Q |
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| T |
17581961 |
tagcatattt--------accagtgatttgtttttgttacgaaggttagcaatgattctgctacaagaagttacggtgcagtatttgatagtggcttgct |
17581870 |
T |
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| Q |
542 |
taaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatcttggaactttg |
627 |
Q |
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| T |
17581869 |
taaatggcttaaatccaagaaatagaattttgttctctatgtaagttttggcagcttaaacaagtttccaacatcttggaactttg |
17581784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 17582365 - 17582163
Alignment:
| Q |
9 |
cattattcttctcatgattgatatccctgtgctcgaatatcatttgtaacattatacactgtgaagtgcaaatatatgtgcttgatttatctgacaaaat |
108 |
Q |
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| T |
17582365 |
cattattcttctcatgattgatatccctgtgctcgaatatcatttgtaacattatacattgtgaagtgcaaatat--gtgcttgatttatctgacaaaat |
17582268 |
T |
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| Q |
109 |
ttgcttggatggctgtttgttgttgtgcctcaagtgaagtttccacaatattatcagtgtcttggtgcagaacttgtgctatcttaggggcaacctccaa |
208 |
Q |
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| T |
17582267 |
ttgcttggatggctgtttgttgttgtgcctcaagtgaagtttccacaatattatcagtgtcttggtgcagaacttgtgctatcttaggggcaacctccaa |
17582168 |
T |
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| Q |
209 |
aatgg |
213 |
Q |
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||||| |
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| T |
17582167 |
aatgg |
17582163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 17572808 - 17572720
Alignment:
| Q |
529 |
atagtggcttgcttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatct |
617 |
Q |
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|||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17572808 |
atagtgacttgcttaaatggctaaactccaagaaagagaattctgttctctatgtaagttttggcagcttaaacaagttcccaacatct |
17572720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 17619904 - 17619992
Alignment:
| Q |
529 |
atagtggcttgcttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatct |
617 |
Q |
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| T |
17619904 |
atagtgacttgcttaaatggctgcactccaagaaagagaattctgttatctatgtaagttttggcagcttaaacaagttcccaccatct |
17619992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 532
Target Start/End: Complemental strand, 17573015 - 17572955
Alignment:
| Q |
472 |
tttttgttacgaaggttagcaatgattctgctacaagaagttacggtgcagtatttgatag |
532 |
Q |
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||||||||| |||||| | ||||||||| |||||||||||||| || ||||||||| |||| |
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| T |
17573015 |
tttttgttatgaaggtgatcaatgattcagctacaagaagttatggcgcagtatttaatag |
17572955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 14744971 - 14745292
Alignment:
| Q |
9 |
cattattcttctcatgattgatatccctgtgctcgaatatcatttgtaacattatacactgtgaagtgcaaatatatgtgcttgatttatctgacaaaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
14744971 |
cattattcttctcatgattgatatccctgtgctcgaatatcatttgtaacattatacattgtgaagtgcaaatat--gtgcttgatttatctgacaaaat |
14745068 |
T |
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| Q |
109 |
ttgcttggatggctgtttgttgttgtgcctcaagtgaagtttccacaatattatcagtgtcttggtgcagaacttgtgctatcttaggggcaacctccaa |
208 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14745069 |
ttccttggatggctgtttgttgttgtgcctcaagtgaagtttccacaatattatcagtgtcttggtgcagaagttgtgctatcttaggggcaacctccaa |
14745168 |
T |
|
| Q |
209 |
aatggcttgcttttcaagtgaggtagactagactgcagttac----catattggatgagaaagcaaaactcttgaaccatcattttttattttgatttaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14745169 |
aatggcttgcttttcaagtgaggtagactagactacagttaccatgcatattgcatgagaaagcaaaactcttgaaccatcattttttattttgatttaa |
14745268 |
T |
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| Q |
305 |
ttcagatatacctttcactgtaaa |
328 |
Q |
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|||||||||||||||||||||||| |
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| T |
14745269 |
ttcagatatacctttcactgtaaa |
14745292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 540 - 624
Target Start/End: Original strand, 14756401 - 14756485
Alignment:
| Q |
540 |
cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatcttggaact |
624 |
Q |
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| T |
14756401 |
cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtttacaacatcttggaact |
14756485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 14710398 - 14710317
Alignment:
| Q |
536 |
cttgcttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatct |
617 |
Q |
| |
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|||||||||||||||||| || |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
14710398 |
cttgcttaaatggcttaactctaagaaagagaattctgttctctatctaagttttggcagcttaaacaagttcccaacatct |
14710317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 528 - 617
Target Start/End: Original strand, 12613421 - 12613510
Alignment:
| Q |
528 |
gatagtggcttgcttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagcttaaacaagtttccaacatct |
617 |
Q |
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| T |
12613421 |
gatagtagtttgtttaaatggcttaattccaagaaagagaattctgttctctatgtaagttttggtagcatgaacaagttcccatcatct |
12613510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 53896391 - 53896354
Alignment:
| Q |
347 |
gtcaatcgtaacagtttgatgatgaaaactccttgcct |
384 |
Q |
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|||||||||||||||||| || |||||||||||||||| |
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| T |
53896391 |
gtcaatcgtaacagtttgttggtgaaaactccttgcct |
53896354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 324
Target Start/End: Complemental strand, 53896445 - 53896417
Alignment:
| Q |
296 |
ttgatttaattcagatatacctttcactg |
324 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
53896445 |
ttgatttaattcagatatacctttcactg |
53896417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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