View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18810_low_6 (Length: 485)
Name: NF18810_low_6
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18810_low_6 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 741930 - 742411
Alignment:
| Q |
1 |
aagattaaaataatgatgatgatgctataataataacacttacaggatcatagctctcagcaagtatataatccactgctccatctgtaacttccaccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
741930 |
aagattaaaataatgatgatgatgctataataataacacttacaggatcatagctctcagcaagtatataatccactgctccatctgtaacttccaccaa |
742029 |
T |
|
| Q |
101 |
tgtagttcctttcctacaaaaacgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
742030 |
tgtagttcctttcctacaaaaacgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaact |
742129 |
T |
|
| Q |
201 |
ttggttagctggcccaacaattctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
742130 |
ttggttagctggcccaacaattctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccac |
742229 |
T |
|
| Q |
301 |
tttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
742230 |
tttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaa |
742329 |
T |
|
| Q |
401 |
gatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttcatctc |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
742330 |
gatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttcttctc |
742411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 26 - 482
Target Start/End: Original strand, 42449088 - 42449541
Alignment:
| Q |
26 |
tataataataacacttacaggatcatagctctcagcaagtatataatccactgctccatctgtaacttccaccaatgtagttcctttcctacaaaaacga |
125 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |||||||||| ||| || |||| |
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|
| T |
42449088 |
tataatagtaacacttacaggatcatagctctcagcaagtatataatccactgctccatctgtaactgccaacga---agttcctttcttaccaagacga |
42449184 |
T |
|
| Q |
126 |
ttagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaattcta |
225 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
42449185 |
ttacctacatccttgatttgcaaccttgcaaccttcctcaattgctggtaagaaagaggattgaatactacaactttggtcagctgattcaacaattcta |
42449284 |
T |
|
| Q |
226 |
accagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggtt |
325 |
Q |
| |
|
| |||||| ||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || |||||||| |
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|
| T |
42449285 |
gcaggaaatgctcactgacttcctgcattactcgatcgtgagctacttggatggtacattttcctgaaagtccacttaagagatgatcggcaccaaggtt |
42449384 |
T |
|
| Q |
326 |
cgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattaca |
425 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
42449385 |
cgaggtcatgataatgaccatgttcgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtaatttgttgattact |
42449484 |
T |
|
| Q |
426 |
gaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttcatctc |
482 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||| |||||||||||| |||| |
|
|
| T |
42449485 |
gaagtatgtgctttctccacttcttccaaaagtagcacactgtttggccttcttctc |
42449541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 122 - 477
Target Start/End: Original strand, 739958 - 740318
Alignment:
| Q |
122 |
acgattagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaat |
221 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| | |||||| ||||||| | ||| | ||||||| |
|
|
| T |
739958 |
acgattagctacatccttcatttgcatccttgcaaccttcctcaattgcttgtgagaaagagggtcgaatacaacaacttcgtccagccgattcaacaat |
740057 |
T |
|
| Q |
222 |
tctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaa |
321 |
Q |
| |
|
||| || |||||||| | ||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||| || | |||| |
|
|
| T |
740058 |
tctggcctgaaatgatttctcacttcctgcattactttatcgcgagcaacttccatggtacattttcctgaaagtccacttaggagatgctcggaaccaa |
740157 |
T |
|
| Q |
322 |
ggttcgaggtcatgataacgaccgtgt-----tcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttg |
416 |
Q |
| |
|
|||| ||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||||||| | ||||| | ||| || || |
|
|
| T |
740158 |
ggtttgaggtcatgataatgactgtgttcctatcctaaaatccacagttctgccttgtccatcagttagcctcccataatttaagacttcaagcagagtg |
740257 |
T |
|
| Q |
417 |
ttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttc |
477 |
Q |
| |
|
|| | |||||| ||||||||||||||||||| || ||||||| |||| ||| |||||||| |
|
|
| T |
740258 |
tttaatacagatatatgtgctttctccacttgctctaaaagtatcacactgtgtggccttc |
740318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 37 - 459
Target Start/End: Complemental strand, 10047002 - 10046583
Alignment:
| Q |
37 |
cacttacaggatcatagctctcagcaagtatataatccactgctccatctgtaacttccaccaatgtagttcctttcctacaaaaacgattagctacatc |
136 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| | |||| ||| |||||| ||| ||| | ||||| || || |||| |||| ||||| |
|
|
| T |
10047002 |
cacttacgggatcatagctttcagcaagtatataatctagtgctggatcagtaactgcca---atgcaattcctctctcggcaagacgactagcaacatc |
10046906 |
T |
|
| Q |
137 |
cttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaattctaaccagaaatga |
236 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||| || |||| |||||| ||||||| | |||| |||||||||| || |||||| |
|
|
| T |
10046905 |
cttcatttgcaaccttgcaaccttcctcaattgctcgtgagatagtggatcgaatacaacaacttcgtctagcctattcaacaattctggccggaaatgc |
10046806 |
T |
|
| Q |
237 |
tcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatga |
336 |
Q |
| |
|
| |||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||| |||||||||| |
|
|
| T |
10046805 |
ttttttacttccagcattactcggtcgcgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgatcggcgccgaggtttgaggtcatga |
10046706 |
T |
|
| Q |
337 |
taacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgc |
436 |
Q |
| |
|
||| ||| |||||| |||||||||||||||| ||||| ||||||||||| || || || |||| || | ||| || |||||| |||||| ||||||| |
|
|
| T |
10046705 |
taatgactgtgttcctaaaatccacagttcttccttggccatcagttaatcttccgtcatctaggacttgaagcagagtgttgaatacagatgtatgtgc |
10046606 |
T |
|
| Q |
437 |
tttctccacttcttcgaaaagta |
459 |
Q |
| |
|
|||||| ||||| || ||||||| |
|
|
| T |
10046605 |
tttctctacttcatcaaaaagta |
10046583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 339
Target Start/End: Complemental strand, 38708617 - 38708308
Alignment:
| Q |
32 |
aataacacttacaggatcatagctctcagcaagtatataatccact-----gctccatctgtaacttccaccaatgtagttcctttcctacaaaaacgat |
126 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| | | ||| |||||||||| ||| || | ||||| || | || |||| |
|
|
| T |
38708617 |
aataacacttacaggatcatagctttcagcaagtatataatctaatctagtgctggatctgtaactgccag---tgcaattcctctctcagcaagacgac |
38708521 |
T |
|
| Q |
127 |
tagctacatccttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaattctaa |
226 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| || ||||| ||| ||| ||||| ||||||| ||| |||||||||| |
|
|
| T |
38708520 |
tagctacatccttcattttcaaccttgcaaccttcctcaattactcatgagatagatgatcaaatacaacaacttcatccagcgaattcaacaattctgg |
38708421 |
T |
|
| Q |
227 |
ccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttc |
326 |
Q |
| |
|
| |||||| | |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| || || |||||||| |
|
|
| T |
38708420 |
tctgaaatgtttttttacttcctgcattactcgatcacgagcaacttgcatggtgcattttcctgaaagtccacttatgagatgctcggcaccaaggttt |
38708321 |
T |
|
| Q |
327 |
gaggtcatgataa |
339 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38708320 |
gaggtcatgataa |
38708308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 37 - 394
Target Start/End: Complemental strand, 45468663 - 45468309
Alignment:
| Q |
37 |
cacttacaggatcatagctctcagcaagtatataatccactgctccatctgtaacttccaccaatgtagttcctttcctacaaaaacgattagctacatc |
136 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| | ||| ||||||| ||| ||| ||| | ||||| || | || |||| |||| ||||| |
|
|
| T |
45468663 |
cacttactggatcatagctctcagcaagaatataatctagagctgcatctgttactgcca---atgcaattcctctctcagcaagacgactagccacatc |
45468567 |
T |
|
| Q |
137 |
cttgatttgcaaccttgcaaccttcctcaattgctggtgagaaagaggattgaatactacaactttggttagctggcccaacaattctaaccagaaatga |
236 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||| || || ||||||| ||||| ||||||| | || || |||||||||| || |||||| |
|
|
| T |
45468566 |
cttcatttgcaaccttgcaacctttctcaattgctcatgtgatagaggatcaaatacaacaacttcgtccagtcggttcaacaattctggcctgaaatgc |
45468467 |
T |
|
| Q |
237 |
tcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatga |
336 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||| |
|
|
| T |
45468466 |
cttcttacttcctgcatcactcgatcgcgagcagcttgcatggtacattttcctgaaagtccactcaagagatgctcagcaccaaggttagaggtcatga |
45468367 |
T |
|
| Q |
337 |
taacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatc |
394 |
Q |
| |
|
| | || ||||| ||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
45468366 |
tgatcacagtgtttctaaaatccacagttctgccttgtccgtcagtcaacctcccatc |
45468309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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