View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18810_low_7 (Length: 469)
Name: NF18810_low_7
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18810_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 232 - 453
Target Start/End: Original strand, 44154548 - 44154769
Alignment:
| Q |
232 |
gcgtgatgaaacattaacaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgctgatttgggtccctccgccagtt |
331 |
Q |
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| T |
44154548 |
gcgtgatgaaacattaaaaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgatgatttgggtccctccgccagtt |
44154647 |
T |
|
| Q |
332 |
tatcagagctcatgaaatcgtcttttctcttcttcgactttggaaattcctcagattcttcttctgcatcaataatcattaatcagccaaaggaatttta |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44154648 |
tatcagagctcatgaaatcgtcttttctcttcttcgactttggaaattcctcagattcttcttctgcatcaataatcattaatcagccaaaggaatttta |
44154747 |
T |
|
| Q |
432 |
aacacgcacaaattgaactaat |
453 |
Q |
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|||||||||||||||||||||| |
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| T |
44154748 |
aacacgcacaaattgaactaat |
44154769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 44154316 - 44154520
Alignment:
| Q |
8 |
tggacatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgcatcattagcatccatcaatc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44154316 |
tggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgcatcattagcatccatcaatc |
44154415 |
T |
|
| Q |
108 |
--------aatcaaacattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatccttga |
199 |
Q |
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| T |
44154416 |
aatcaattaatcaaacattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatccttga |
44154515 |
T |
|
| Q |
200 |
attca |
204 |
Q |
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||||| |
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| T |
44154516 |
attca |
44154520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 40899041 - 40899237
Alignment:
| Q |
8 |
tggacatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgcatcattagcatccatcaatc |
107 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
40899041 |
tggaaatcatcaggggtcatgcatttgatggagtttgatttgtctttgaacacataatattctccttttactgttacagcatcgttagcatccatcaatc |
40899140 |
T |
|
| Q |
108 |
aatcaaacattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatccttgaattca |
204 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40899141 |
aatcaaaaattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatccttgaattca |
40899237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 232 - 445
Target Start/End: Original strand, 40899265 - 40899477
Alignment:
| Q |
232 |
gcgtgatgaaacattaacaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgctgatttgggtccctccgccagtt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |
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| T |
40899265 |
gcgtgatgaaacattaacaaatgaaatatgccagcaagaagagtagtaatactttcataatcaaagccataatctgcttttttcggttcctccgccagtt |
40899364 |
T |
|
| Q |
332 |
tatcagagctcatgaaatcgtcttttctcttcttcgactttggaaattcctcagattcttcttctgcatcaataatcattaatcagccaaaggaatttta |
431 |
Q |
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||||||||||||||| |||| ||||||||| |||||||||| || || |||||||||||| |||||||||||||||||||||||| |||||||| || |
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| T |
40899365 |
tatcagagctcatgacatcgcattttctctttttcgactttgaaattttctcagattcttcatctgcatcaataatcattaatcag-ataaggaattata |
40899463 |
T |
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| Q |
432 |
aacacgcacaaatt |
445 |
Q |
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|||||||||||||| |
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| T |
40899464 |
aacacgcacaaatt |
40899477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 40893829 - 40893762
Alignment:
| Q |
125 |
caacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaaca |
192 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||| |
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| T |
40893829 |
caacaacaacacattcaaaaatcataattaaaccatctaaactaaaacaaatgaaatcagaaacaaca |
40893762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 44154258 - 44154303
Alignment:
| Q |
240 |
aaacattaacaaatgaaatatgccagcaagaagagtagtaatactt |
285 |
Q |
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|||||||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
44154258 |
aaacattaacaaatgaaataagtcagaaagaagagtagtaatactt |
44154303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 40898983 - 40899028
Alignment:
| Q |
240 |
aaacattaacaaatgaaatatgccagcaagaagagtagtaatactt |
285 |
Q |
| |
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|||||||||||| ||||||| | ||| ||||||||||||||||||| |
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| T |
40898983 |
aaacattaacaactgaaataagtcagaaagaagagtagtaatactt |
40899028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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