View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18810_low_8 (Length: 447)

Name: NF18810_low_8
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18810_low_8
NF18810_low_8
[»] chr7 (3 HSPs)
chr7 (5-433)||(24914740-24915168)
chr7 (1-40)||(25968510-25968549)
chr7 (6-47)||(22478863-22478904)
[»] chr8 (1 HSPs)
chr8 (1-40)||(7227035-7227074)
[»] chr5 (4 HSPs)
chr5 (1-40)||(1055897-1055936)
chr5 (1-40)||(9111366-9111405)
chr5 (1-40)||(16424915-16424954)
chr5 (4-40)||(29095866-29095902)
[»] chr4 (2 HSPs)
chr4 (1-40)||(1829347-1829386)
chr4 (1-40)||(50418093-50418132)
[»] chr3 (2 HSPs)
chr3 (1-40)||(28482572-28482611)
chr3 (1-40)||(28511384-28511423)
[»] chr2 (1 HSPs)
chr2 (1-40)||(40957961-40958000)
[»] chr1 (2 HSPs)
chr1 (1-40)||(38203072-38203111)
chr1 (6-40)||(6413623-6413657)


Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 5 - 433
Target Start/End: Complemental strand, 24915168 - 24914740
Alignment:
Q  5 aaaaagttgacatatttataaagacaaaaaacatatgtatccccnnnnnnnnnnnnnnctctcttaaacatttttgtcattctaaaattattgagttgtt 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||||              ||||||||||||||| ||||||||||||| ||||||||||||    
T  24915168 aaaaagttgacatatttataaggacaaaaaacatatgtatcccctttttttcttttttctctcttaaacatttatgtcattctaaaagtattgagttgtt 24915069  T
Q  105 cttagctatgaagattgggaaatgataataaattacgaatattaattatatattttttaaagaattataagatgcctcgtgtttaaggaagtaattattt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24915068 cttagctatgaagattgggaaatgataataaattacgaatattaattatatattttttaaagaattataagatgcctcgtgtttaaggaagtaattattt 24914969  T
Q  205 tcagattattaacagaattggtttgcattttttgtatagagtaaacaagatggcatgaggaagaaggatgatcacaatttgacaaataaaagtaaaagcc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24914968 tcagattattaacagaattggtttgcattttttgtatagagtaaacaagatggcacgaggaagaaggatgatcacaatttgacaaataaaagtaaaagcc 24914869  T
Q  305 aaaaggtactacttttgttcttttgatattcatattaccatacaactcttcagaatgataatacttactctatatactgataataagtctgaaacaaaat 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24914868 aaaaggtactacttttgttcttttgatattcatattaccatacaactcttcagaatgatattacttactctatatactgataataagtctgaaacaaaat 24914769  T
Q  405 tgtgacttatgcttgaatatgcaaatatt 433  Q
    |||||||||||||||||||||||||||||    
T  24914768 tgtgacttatgcttgaatatgcaaatatt 24914740  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25968510 - 25968549
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  25968510 aaacaaaaagttgacatatttatagagacaaaaaacatat 25968549  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 22478863 - 22478904
Alignment:
Q  6 aaaagttgacatatttataaagacaaaaaacatatgtatccc 47  Q
    |||||||||||||||||||| ||| |||||||||| ||||||    
T  22478863 aaaagttgacatatttataaggaccaaaaacatatttatccc 22478904  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7227035 - 7227074
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7227035 aaacaaaaagttgacatatttatagagacaaaaaacatat 7227074  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1055936 - 1055897
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  1055936 aaacaaaaagttgacatatttataaggaccaaaaacatat 1055897  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9111405 - 9111366
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  9111405 aaacaaaaagttaacatatttataaagaccaaaaacatat 9111366  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16424954 - 16424915
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  16424954 aaacaaaaagttggcatatttatagagacaaaaaacatat 16424915  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 29095902 - 29095866
Alignment:
Q  4 caaaaagttgacatatttataaagacaaaaaacatat 40  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  29095902 caaaaaattgacatatttataaggacaaaaaacatat 29095866  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1829347 - 1829386
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  1829347 aaacaaaaagttggcatatttataaagaccaaaaacatat 1829386  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 50418132 - 50418093
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  50418132 aaacaaaaagttgaaatatttataaagacaaaaaccatat 50418093  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28482611 - 28482572
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  28482611 aaacaaaaagttgacatatttatagggacaaaaaacatat 28482572  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28511423 - 28511384
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  28511423 aaacaaaaagttgacatatttatagggacaaaaaacatat 28511384  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40957961 - 40958000
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  40957961 aaacgaaaagttgacatatttataaagaccaaaaacatat 40958000  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38203111 - 38203072
Alignment:
Q  1 aaacaaaaagttgacatatttataaagacaaaaaacatat 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  38203111 aaacaaaaagttgacatatttatagagaccaaaaacatat 38203072  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 6413657 - 6413623
Alignment:
Q  6 aaaagttgacatatttataaagacaaaaaacatat 40  Q
    ||||||||||||||||||| |||||||||||||||    
T  6413657 aaaagttgacatatttatagagacaaaaaacatat 6413623  T

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