View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18810_low_9 (Length: 435)

Name: NF18810_low_9
Description: NF18810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18810_low_9
NF18810_low_9
[»] chr3 (9 HSPs)
chr3 (25-424)||(21827975-21828373)
chr3 (281-359)||(8115215-8115293)
chr3 (121-191)||(25189338-25189408)
chr3 (227-331)||(8713951-8714055)
chr3 (227-331)||(9065838-9065942)
chr3 (290-331)||(18066721-18066761)
chr3 (121-176)||(8713844-8713900)
chr3 (121-176)||(9065731-9065787)
chr3 (95-200)||(26419936-26420042)
[»] chr4 (17 HSPs)
chr4 (95-378)||(21048176-21048454)
chr4 (95-359)||(33520012-33520271)
chr4 (251-359)||(21078146-21078254)
chr4 (266-335)||(22219761-22219829)
chr4 (100-165)||(8926427-8926492)
chr4 (96-204)||(18778276-18778385)
chr4 (266-335)||(23437340-23437409)
chr4 (99-191)||(19602931-19603023)
chr4 (283-356)||(23354558-23354631)
chr4 (93-141)||(20717948-20717995)
chr4 (283-359)||(30797496-30797571)
chr4 (95-194)||(30797655-30797754)
chr4 (91-165)||(13066843-13066917)
chr4 (102-165)||(17331499-17331561)
chr4 (121-191)||(24912165-24912235)
chr4 (92-141)||(10450305-10450353)
chr4 (134-191)||(22120839-22120896)
[»] chr5 (11 HSPs)
chr5 (93-405)||(7741171-7741485)
chr5 (97-359)||(18179163-18179423)
chr5 (123-196)||(20695918-20695991)
chr5 (154-313)||(30791534-30791692)
chr5 (226-313)||(15692880-15692967)
chr5 (100-151)||(20101029-20101080)
chr5 (241-317)||(18281208-18281285)
chr5 (250-330)||(25681966-25682047)
chr5 (121-188)||(15692775-15692842)
chr5 (102-151)||(22642798-22642847)
chr5 (124-192)||(19443312-19443380)
[»] chr1 (21 HSPs)
chr1 (95-359)||(33175493-33175754)
chr1 (230-359)||(19256943-19257070)
chr1 (250-311)||(15297641-15297702)
chr1 (95-195)||(23420485-23420583)
chr1 (283-335)||(9251745-9251796)
chr1 (283-335)||(34521944-34521995)
chr1 (125-196)||(23506766-23506837)
chr1 (289-360)||(34932010-34932081)
chr1 (283-336)||(23420670-23420723)
chr1 (287-335)||(9329065-9329112)
chr1 (226-313)||(39427960-39428048)
chr1 (290-333)||(25132835-25132877)
chr1 (110-152)||(19256822-19256864)
chr1 (122-152)||(19884061-19884091)
chr1 (122-152)||(31318436-31318466)
chr1 (266-335)||(17836968-17837036)
chr1 (95-191)||(25664822-25664918)
chr1 (99-204)||(25778861-25778965)
chr1 (174-238)||(28411532-28411594)
chr1 (121-165)||(15415905-15415949)
chr1 (93-141)||(34522129-34522176)
[»] chr8 (15 HSPs)
chr8 (93-201)||(6887057-6887165)
chr8 (198-335)||(8541698-8541839)
chr8 (241-338)||(23951592-23951688)
chr8 (251-331)||(27084567-27084647)
chr8 (225-370)||(28290334-28290481)
chr8 (250-335)||(16048779-16048862)
chr8 (100-200)||(14140198-14140298)
chr8 (101-148)||(18790061-18790107)
chr8 (102-149)||(36317253-36317300)
chr8 (241-310)||(13581968-13582038)
chr8 (122-151)||(13528979-13529008)
chr8 (122-151)||(13618518-13618547)
chr8 (289-330)||(24926852-24926893)
chr8 (290-335)||(28900331-28900375)
chr8 (93-152)||(12957553-12957612)
[»] scaffold0190 (1 HSPs)
scaffold0190 (241-335)||(7021-7115)
[»] chr7 (22 HSPs)
chr7 (94-309)||(18805843-18806055)
chr7 (249-366)||(13709016-13709134)
chr7 (226-359)||(22334288-22334421)
chr7 (283-335)||(5637258-5637309)
chr7 (102-204)||(21536418-21536521)
chr7 (244-335)||(4091505-4091595)
chr7 (95-165)||(2352143-2352212)
chr7 (101-195)||(11466917-11467010)
chr7 (283-336)||(11467095-11467148)
chr7 (250-359)||(20347362-20347471)
chr7 (91-179)||(22271054-22271142)
chr7 (93-203)||(18494563-18494674)
chr7 (121-165)||(21236378-21236422)
chr7 (93-141)||(21544688-21544735)
chr7 (101-148)||(10925074-10925120)
chr7 (121-196)||(22334185-22334260)
chr7 (121-151)||(8923216-8923246)
chr7 (111-144)||(20347573-20347606)
chr7 (102-138)||(2090958-2090994)
chr7 (93-141)||(4091354-4091401)
chr7 (121-149)||(4995916-4995944)
chr7 (93-141)||(7494500-7494547)
[»] chr6 (14 HSPs)
chr6 (268-378)||(12971458-12971567)
chr6 (99-204)||(17196110-17196215)
chr6 (93-232)||(21604645-21604782)
chr6 (270-368)||(16440361-16440458)
chr6 (289-378)||(12967106-12967194)
chr6 (289-378)||(12969292-12969380)
chr6 (270-359)||(26498878-26498970)
chr6 (121-200)||(16174380-16174459)
chr6 (102-201)||(22557856-22557955)
chr6 (94-152)||(17320778-17320835)
chr6 (96-180)||(8037013-8037097)
chr6 (93-138)||(13194289-13194333)
chr6 (250-330)||(17859101-17859182)
chr6 (93-141)||(15576198-15576245)
[»] chr2 (7 HSPs)
chr2 (94-151)||(31275294-31275351)
chr2 (249-331)||(20518290-20518372)
chr2 (101-151)||(25461248-25461298)
chr2 (93-146)||(24438608-24438661)
chr2 (102-180)||(21243240-21243318)
chr2 (96-182)||(23854055-23854140)
chr2 (290-335)||(27416273-27416317)
[»] scaffold0280 (1 HSPs)
scaffold0280 (250-358)||(17258-17366)
[»] scaffold0008 (1 HSPs)
scaffold0008 (105-151)||(10804-10850)
[»] scaffold0171 (2 HSPs)
scaffold0171 (283-335)||(7172-7223)
scaffold0171 (93-141)||(7366-7413)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 25 - 424
Target Start/End: Original strand, 21827975 - 21828373
Alignment:
Q  25 cacatccataaaggaaagatttgttgttcaagtctgtcaatctgaacacatccacagttattagtggtgaaattggcaagtgcaacaaatcgtacgcaag 124  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| ||||||||    
T  21827975 cacatccataaaggaaagatttgtt-ttcaagtctgtcaatctgaacacatccacagtcattggtgatgaaattggcaagtgcaacaaatcatacgcaag 21828073  T
Q  125 taataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaaataaaataatttaataagagatgaagt-c 223  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  21828074 taataaagtagtaagttat-gtctccactgagattgtcgttaaaatcagtaattagtggaatttattagaaataaaataatttaataagagatgaagttc 21828172  T
Q  224 gtttgcagggttttacatgtccttctcaatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctt 323  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21828173 gtttgcagggttttacatgtccttctcaatgcgagattaggttttgtgattcataattataatgacgattagggaatccttgaatccccccttccatctt 21828272  T
Q  324 tgttggaattaatttggttgattgttagtttatgacctgcctttcgaattaagaacggaggacatggccttgtgatgtatcaatagaatttttagtttca 423  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21828273 tcttggaattaatttggttgattgttagtttatgacctgtctttcgaattaagaacggaggacatggccttgtgatgtatcaatagaatttttagtttca 21828372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 8115215 - 8115293
Alignment:
Q  281 tataacgacgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgac 359  Q
    ||||||||| ||||||||||| ||||||| ||||| |  |||||||| || |||| | |||| ||| ||||||||||||    
T  8115215 tataacgacaattagggaatcattgaatctcccctactgtctttgtttgagttaactcggttaattattagtttatgac 8115293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 25189408 - 25189338
Alignment:
Q  121 caagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttatt 191  Q
    |||||||||||||  |||||| |||||||||| |||||||||||| || | || ||||| || ||||||||    
T  25189408 caagtaataaagtgataagttctcgtctccacagagattgtcgttcaacttagcaattaacgaaatttatt 25189338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 8713951 - 8714055
Alignment:
Q  227 tgcagggttttacatgtccttctcaatgcgagattagattttgt-gattcataattataacgacgattagggaatccttgaatccccccttccatctttg 325  Q
    |||||||||| |  |||||| | |||||| ||||||| ||| || |||||| ||   |||| ||||||||||||||||||||||||  ||| ||||||||    
T  8713951 tgcagggtttaaattgtcctgcccaatgcaagattaggtttggttgattcagaagattaacaacgattagggaatccttgaatcccatctt-catctttg 8714049  T
Q  326 ttggaa 331  Q
    ||||||    
T  8714050 ttggaa 8714055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 9065838 - 9065942
Alignment:
Q  227 tgcagggttttacatgtccttctcaatgcgagattagattttgt-gattcataattataacgacgattagggaatccttgaatccccccttccatctttg 325  Q
    |||||||||| |  |||||| | |||||| ||||||| ||| || |||||| ||   |||| ||||||||||||||||||||||||  ||| ||||||||    
T  9065838 tgcagggtttaaattgtcctgcccaatgcaagattaggtttggttgattcagaagattaacaacgattagggaatccttgaatcccatctt-catctttg 9065936  T
Q  326 ttggaa 331  Q
    ||||||    
T  9065937 ttggaa 9065942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 18066761 - 18066721
Alignment:
Q  290 gattagggaatccttgaatccccccttccatctttgttggaa 331  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  18066761 gattagggaatccttgaatcccacctt-catctttgttggaa 18066721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 8713844 - 8713900
Alignment:
Q  121 caagtaataaagtagtaagtt-atcgtctccactgagattgtcgttaaaatcagtaa 176  Q
    ||||||||||||||||||||| ||||| ||||| | ||||||| || ||||||||||    
T  8713844 caagtaataaagtagtaagttaatcgtttccacagggattgtcattcaaatcagtaa 8713900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 9065731 - 9065787
Alignment:
Q  121 caagtaataaagtagtaagtt-atcgtctccactgagattgtcgttaaaatcagtaa 176  Q
    ||||||||||||||||||||| ||||| ||||| | ||||||| || ||||||||||    
T  9065731 caagtaataaagtagtaagttaatcgtttccacagggattgtcattcaaatcagtaa 9065787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 26420042 - 26419936
Alignment:
Q  95 aattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatc--gtctccactgagattgtcgttaaaatcagtaattagcggaatttatta 192  Q
    |||||||||||| | |||||||||  ||||||||||| ||||||||||||  ||||||||  ||| ||| ||| || | || ||||  ||||||||||||    
T  26420042 aattggcaagtgaatcaaatcgtaa-caagtaataaaatagtaagttatcgtgtctccacaaagactgttgttcaacttagcaattgacggaatttatta 26419944  T
Q  193 gaaataaa 200  Q
    ||| ||||    
T  26419943 gaagtaaa 26419936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 378
Target Start/End: Complemental strand, 21048454 - 21048176
Alignment:
Q  95 aattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattaga 194  Q
    |||| ||| ||||| |||||||||||||| |||||||   |||||||||||||| |||   |||||| ||| || |  ||||||||||||||||||||||    
T  21048454 aattcgcatgtgcaccaaatcgtacgcaaataataaaaaggtaagttatcgtcttcacaaggattgttgttcaacttggtaattagcggaatttattaga 21048355  T
Q  195 aataaaataatttaataagagatgaagtcgtttgcagggttttacatgtccttctcaatgcgagattagattttgtgattcataattataacgacgatta 294  Q
    ||||||| ||||||  |||||||||||| ||| ||| |||||||   ||| | |  ||||||||||||| |||||||||||| || | ||||  ||||||    
T  21048354 aataaaagaattta--aagagatgaagtggttggcatggttttaatcgtcatgcataatgcgagattaggttttgtgattcagaagtttaacagcgatta 21048257  T
Q  295 gggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgacctgcctttcgaattaagaa 378  Q
      ||||||||||||   ||||||||||||||||| |||||| | ||||  || |||||| |||||||  |||| || |||||||    
T  21048256 -agaatccttgaat--tcccttccatctttgttgaaattaactcggttatttattagttgatgacctctctttggatttaagaa 21048176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 359
Target Start/End: Complemental strand, 33520271 - 33520012
Alignment:
Q  95 aattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattaga 194  Q
    |||||| ||||| | |||||||||  |||||| ||||||||||||||||  ||| ||   | ||||||||| || ||  ||| ||| ||||||||||| |    
T  33520271 aattggtaagtggatcaaatcgtagacaagtagtaaagtagtaagttattctcttcataaaaattgtcgttcaactcgataaatagtggaatttattata 33520172  T
Q  195 aataaaataatttaataagagatgaagtcgtttgcagggttttacatgtccttctcaatgcgagattagattttgtgattcataattataacgacgatta 294  Q
    ||||||  ||||||| |||||||||| | |||| ||||||||||  ||  || | | |||| ||||| |||||  ||||||| || | |||||||| |||    
T  33520171 aataaatgaatttaa-aagagatgaaatggtttacagggttttaattgctctgccctatgcaagattggattt--tgattcaaaagtttaacgacggtta 33520075  T
Q  295 gggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgac 359  Q
      ||||| |||||  |||| |||  |||||||||||||||||||| |||||| ||||||||||||    
T  33520074 aagaatcgttgaa--cccctttctctctttgttggaattaatttgattgattattagtttatgac 33520012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 359
Target Start/End: Complemental strand, 21078254 - 21078146
Alignment:
Q  251 aatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgtta 350  Q
    ||||||||||||| |||||||||| | || ||||||  || ||| | ||||||||||| ||| ||||| |||||||||||||||| | | |||||| |||    
T  21078254 aatgcgagattaggttttgtgatttaaaagtataacagcggttaagaaatccttgaataccctcttccgtctttgttggaattaactcgattgattatta 21078155  T
Q  351 gtttatgac 359  Q
    |||||||||    
T  21078154 gtttatgac 21078146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 22219829 - 22219761
Alignment:
Q  266 tttgtgattcataattat-aacgacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||    
T  22219829 tttgtgattca-aattattaacgatgattagggaatccttgaatcccccctt-cgtctttgttggaattaa 22219761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 8926492 - 8926427
Alignment:
Q  100 gcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgtt 165  Q
    ||||||||| |||||| ||| ||||||||||||||| |||||||||||||||  | ||||||||||    
T  8926492 gcaagtgcatcaaatcatactcaagtaataaagtagcaagttatcgtctccatagggattgtcgtt 8926427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 18778385 - 18778276
Alignment:
Q  96 attggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaattta-ttaga 194  Q
    |||||||||| || ||||| |||| |||||||||||||||||||||||||| ||||    |||||||||| || |  ||||||||  ||||||| ||| |    
T  18778385 attggcaagtacaccaaattgtactcaagtaataaagtagtaagttatcgtttccatgtggattgtcgttcaactttgtaattagatgaatttatttaaa 18778286  T
Q  195 aataaaataa 204  Q
    ||||||||||    
T  18778285 aataaaataa 18778276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 23437409 - 23437340
Alignment:
Q  266 tttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    ||||||||||| |  | ||||| ||||||||||||||||||||||||| |||| | ||||||||||||||    
T  23437409 tttgtgattcagagatttaacggcgattagggaatccttgaatcccccattccgtatttgttggaattaa 23437340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 19603023 - 19602931
Alignment:
Q  99 ggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtta-tcgtctccactgagattgtcgttaaaatcagtaattagcggaatttatt 191  Q
    |||||||||| ||||| |||| |||||||||||| ||||||||| |||||||||| | |||| ||||| || || ||||||||| ||| |||||    
T  19603023 ggcaagtgcatcaaatagtac-caagtaataaagcagtaagttaatcgtctccacagggattatcgttcaactcggtaattagctgaacttatt 19602931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 23354631 - 23354558
Alignment:
Q  283 taacgacgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttat 356  Q
    |||| |||||||  ||||||||||||||| |||| ||||||||||||| |||| ||| || ||| |||||||||    
T  23354631 taacaacgattaatgaatccttgaatccctcctttcatctttgttggagttaacttgtttaattattagtttat 23354558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 20717995 - 20717948
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt 141  Q
    |||||||||||||||| |||||||||  |||||||||||||||||||||    
T  20717995 gaaattggcaagtgcaccaaatcgta-acaagtaataaagtagtaagtt 20717948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 30797571 - 30797496
Alignment:
Q  283 taacgacgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgac 359  Q
    ||||||||||||||| |||||||||| | |||| || | |||||||| |||||| || |||||| ||||||||||||    
T  30797571 taacgacgattagggtatccttgaat-ctccctcccttatttgttgggattaatgtgtttgattattagtttatgac 30797496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 30797754 - 30797655
Alignment:
Q  95 aattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaag-ttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattag 193  Q
    |||||||||||||| |||||||||  ||||||||||||||||||| |||||||||| ||   |||||| ||| || | || ||||| || ||||||||||    
T  30797754 aattggcaagtgcatcaaatcgtaa-caagtaataaagtagtaagtttatcgtctcaacaaggattgttgttcaacttagcaattaacgaaatttattag 30797656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 13066917 - 13066843
Alignment:
Q  91 gtgaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt-atcgtctccactgagattgtcgtt 165  Q
    ||||||||| |||||||||||||| |||   |||||||||||||||||||| |||||||| || |||||| |||||    
T  13066917 gtgaaattgacaagtgcaacaaattgtata-aagtaataaagtagtaagttaatcgtctcaacagagattttcgtt 13066843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 17331499 - 17331561
Alignment:
Q  102 aagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgtt 165  Q
    ||||||| ||||||||| | |||||||||||||||||||||| |||||||  | ||||||||||    
T  17331499 aagtgcaccaaatcgta-gtaagtaataaagtagtaagttatagtctccatagggattgtcgtt 17331561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 24912165 - 24912235
Alignment:
Q  121 caagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttatt 191  Q
    ||||||||||||||| |||||||| |||||||  | ||||||||| |||| || ||||| || ||||||||    
T  24912165 caagtaataaagtagcaagttatcatctccacataaattgtcgtttaaattagcaattaacgaaatttatt 24912235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 10450305 - 10450353
Alignment:
Q  92 tgaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt 141  Q
    ||||||||||||||||| |||||||||  ||| |||||||||||||||||    
T  10450305 tgaaattggcaagtgcaccaaatcgta-acaaataataaagtagtaagtt 10450353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 22120896 - 22120839
Alignment:
Q  134 agtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttatt 191  Q
    |||||||||||||| | || | ||||||||||||| ||||||||||  ||||||||||    
T  22120896 agtaagttatcgtcacaacagggattgtcgttaaactcagtaattactggaatttatt 22120839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 93 - 405
Target Start/End: Original strand, 7741171 - 7741485
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtag--taagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttat 190  Q
    |||||||  ||||| |||||||| || |||||||||||||||   ||||||||  |||||||   |||| ||||| || |  |||||| |||||||||||    
T  7741171 gaaattgataagtgaaacaaatcatatgcaagtaataaagtatactaagttataatctccacatggattatcgtttaatttggtaattggcggaatttat 7741270  T
Q  191 tagaaataaaataatttaataagagatgaagtcgtttgcagggttttacatgtccttctcaatgcgagattag-attttgtgattcataattataacgac 289  Q
    ||||||||| | |||| || || ||||||||| |||| || | |||||  |||| | | |||||||| ||||| || |||||||||| || | ||||| |    
T  7741271 tagaaataacaaaattaaaaaacagatgaagtggtttacaagattttaattgtcttgcccaatgcgaaattagtatgttgtgattcagaagtttaacgtc 7741370  T
Q  290 gattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgacctgcctttcgaattaagaacggaggacatg 389  Q
    |||||   |||||||||||||||| |||  ||||||||||| |||| | |||||||| |||||||||||| ||  |||| | ||||||| | || | |||    
T  7741371 gattacaaaatccttgaatccccc-ttctgtctttgttggacttaactcggttgattattagtttatgacatgtttttcaatttaagaaagtagaatatg 7741469  T
Q  390 gccttgtgatgtatca 405  Q
     || ||||||||||||    
T  7741470 accatgtgatgtatca 7741485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 359
Target Start/End: Complemental strand, 18179423 - 18179163
Alignment:
Q  97 ttggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaaa 196  Q
    |||||||||||| |||||| ||  ||||||||||||||||||||||| || ||||     ||| || || || |  |||| |||| ||||||||||||||    
T  18179423 ttggcaagtgcatcaaatcataaacaagtaataaagtagtaagttattgtatccatatgcattatctttcaacttggtaaatagcagaatttattagaaa 18179324  T
Q  197 taaaataatttaataagagatgaagtcgtttgcagggttttacatgtccttctcaatgcgagatt-agattttgtgattcataattataacgacgattag 295  Q
    ||||| ||||  | |||||||||||| ||||||||| |||||  |||  ||| |||||||||||| || | |||||||||| || ||||||   |||||     
T  18179323 taaaagaatt--aaaagagatgaagtggtttgcaggattttaattgt-tttcccaatgcgagattaagttgttgtgattcagaagtataaccgtgattac 18179227  T
Q  296 ggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgac 359  Q
     |||||||||||||    ||||  |||||||||  |||||| | ||| ||| ||||||||||||    
T  18179226 agaatccttgaatcatgtcttctttctttgttgatattaatgtcgttaattattagtttatgac 18179163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 20695991 - 20695918
Alignment:
Q  123 agtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaaa 196  Q
    |||||||||||||||||||||||||||||| | |||||||||| || || |||||||  |||||||||| ||||    
T  20695991 agtaataaagtagtaagttatcgtctccacagggattgtcgttcaactcggtaattataggaatttatttgaaa 20695918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 313
Target Start/End: Complemental strand, 30791692 - 30791534
Alignment:
Q  154 gagattgtcgttaaaatcagtaattagcggaatttattagaaataaaataatttaataagagatgaagtcgtttgcagggttttacatgtcct-tctcaa 252  Q
    |||||||||||| ||||   |||||||||||||||||| |||||||||  |||| | || ||||||||| |||||||||||||||  | | || ||   |    
T  30791692 gagattgtcgttcaaattgataattagcggaatttatttgaaataaaa-gattttagaaaagatgaagtggtttgcagggttttaatttttctatcaaca 30791594  T
Q  253 tgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccc 313  Q
    ||||||||||| ||| |||||| | || ||||||| ||| |||| ||||||||||||||||    
T  30791593 tgcgagattaggtttggtgattgagaagtataacggcga-taggaaatccttgaatccccc 30791534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 15692880 - 15692967
Alignment:
Q  226 ttgcagggttttacatgtccttctcaatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccc 313  Q
    |||||||||||||  |||||| |  |||| |||||||| |||  |||||||||| | | || ||||||||||||||||||||||||||    
T  15692880 ttgcagggttttaattgtcctacctaatgtgagattaggtttattgattcataagtgttacaacgattagggaatccttgaatccccc 15692967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 20101080 - 20101029
Alignment:
Q  100 gcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctcca 151  Q
    ||||||||| |||||| ||| ||||||||||||||||||||||| |||||||    
T  20101080 gcaagtgcatcaaatcatactcaagtaataaagtagtaagttatagtctcca 20101029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 18281208 - 18281285
Alignment:
Q  241 tgtccttctcaatgcgagattagatttt-gtgattcataattataacgacgattagggaatccttgaatccccccttc 317  Q
    |||||| | |||||||| |||||||||| |||||| | || | |||| ||||||||||||||||||||||| ||||||    
T  18281208 tgtcctacccaatgcgatattagatttttgtgatttagaagtgtaacaacgattagggaatccttgaatcctcccttc 18281285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 25682047 - 25681966
Alignment:
Q  250 caatgcgagattagattt-tgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttgga 330  Q
    |||| ||||||||||||| ||||||||| |  | |||| | ||||||||||||||||||||||| ||||  |||||||||||    
T  25682047 caatacgagattagatttgtgtgattcaaatgtgtaacaatgattagggaatccttgaatcccctcttcattctttgttgga 25681966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 15692775 - 15692842
Alignment:
Q  121 caagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaattt 188  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| || || ||  |||||| ||||||||    
T  15692775 caagtaataaaatagtaagttatcgtcttcacagagattgtcattcaactcgataattaacggaattt 15692842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 22642798 - 22642847
Alignment:
Q  102 aagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctcca 151  Q
    ||||||| |||||| ||| |||||||||| ||||||||||| ||||||||    
T  22642798 aagtgcaccaaatcatactcaagtaataatgtagtaagttaacgtctcca 22642847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 19443312 - 19443380
Alignment:
Q  124 gtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttatta 192  Q
    ||||||||||||| |||||| |||| ||| ||||||||| || || | | |||||| ||||||||||||    
T  19443312 gtaataaagtagtgagttattgtcttcacagagattgtcattcaacttaataattaacggaatttatta 19443380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 95 - 359
Target Start/End: Original strand, 33175493 - 33175754
Alignment:
Q  95 aattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattaga 194  Q
    |||||||||||||| |||||| ||  ||||||||||| |||||||||||| |||||||  ||||||||||| || | || |||||| |||||||||||||    
T  33175493 aattggcaagtgcaccaaatcataaacaagtaataaaatagtaagttatcttctccacatagattgtcgttcaacttagcaattagaggaatttattaga 33175592  T
Q  195 aataaaataatttaataagagatgaagtcgtttgcagggttttacatgtccttctcaatgcgagatta-gattttgtgattcataattataacgacgatt 293  Q
    | | ||||||  ||| ||||||| ||| || | | | |||||||  |||||  |||||| |||||||| | |  | ||| ||| |    |||||||||||    
T  33175593 agt-aaataaactaa-aagagataaag-cggtggtaaggttttaattgtcccgctcaatacgagattatgttggtttgactcagatgcgtaacgacgatt 33175689  T
Q  294 agggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgac 359  Q
    ||| ||||||||||| |||| |||| |||||||||||||||||  |||| ||| ||||||||||||    
T  33175690 aggaaatccttgaat-ccccattccttctttgttggaattaatgcggttaattattagtttatgac 33175754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 359
Target Start/End: Original strand, 19256943 - 19257070
Alignment:
Q  230 agggttttacatgtccttctcaatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttgg 329  Q
    |||||||||  ||| || |||||| ||||||||  |||||||||| | || | |||||||||||| ||||||||||||  ||||||||| ||||||||||    
T  19256943 agggttttaattgttctgctcaatacgagattatgttttgtgatttagaagtgtaacgacgattatggaatccttgaa--cccccttccgtctttgttgg 19257040  T
Q  330 aattaatttggttgattgttagtttatgac 359  Q
    | |||| | | |||||| ||||||||||||    
T  19257041 atttaactagattgattattagtttatgac 19257070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 15297641 - 15297702
Alignment:
Q  250 caatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccc 311  Q
    |||||||||||||| |||||||||||| |  |||||||| ||||||||||||||||||||||    
T  15297641 caatgcgagattaggttttgtgattcagaggtataacgatgattagggaatccttgaatccc 15297702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 23420485 - 23420583
Alignment:
Q  95 aattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattaga 194  Q
    |||||||||||| | |||||||||  ||||||||||||||||||||||||||||||||   |||||||||| || | || ||||| | ||||||||||||    
T  23420485 aattggcaagtgtaccaaatcgtaa-caagtaataaagtagtaagttatcgtctccacaaggattgtcgttcaacttagcaattaac-gaatttattaga 23420582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 9251745 - 9251796
Alignment:
Q  283 taacgacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||||||||||    
T  9251745 taacgacgattagggaatccttaaatccctcctt-catctttgttggaattaa 9251796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 34521995 - 34521944
Alignment:
Q  283 taacgacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    ||||||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  34521995 taacgacgattagggaatccttgaatccctcctt-cgtctttgttggaattaa 34521944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 23506837 - 23506766
Alignment:
Q  125 taataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaaa 196  Q
    ||||||||||||||||||||||||| || | || ||||||| || |  ||||||||| ||||||||||||||    
T  23506837 taataaagtagtaagttatcgtctctacagtgaatgtcgttcaacttggtaattagcagaatttattagaaa 23506766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 34932010 - 34932081
Alignment:
Q  289 cgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgacc 360  Q
    |||||| ||||||||| ||||||| ||| | ||||||||||||||| | | ||||||| |||||||||||||    
T  34932010 cgattaaggaatccttaaatccccactttcgtctttgttggaattattgttgttgattattagtttatgacc 34932081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 23420670 - 23420723
Alignment:
Q  283 taacgacgattagggaatccttgaatccccccttccatctttgttggaattaat 336  Q
    |||| ||||| |||||||||| |||||||| ||||| |||||||||||||||||    
T  23420670 taacaacgataagggaatcctagaatccccgcttccgtctttgttggaattaat 23420723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 9329112 - 9329065
Alignment:
Q  287 gacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||||||    
T  9329112 gacgattagggaatacttgaatccctcctt-catctttgttggaattaa 9329065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 39427960 - 39428048
Alignment:
Q  226 ttgcagggttttacatgtccttctcaatgcgagattagattt-tgtgattcataattataacgacgattagggaatccttgaatccccc 313  Q
    ||||||||||||   |||||| ||||||  |||||||  ||| || ||||||||| ||||||| |||||||| ||||||||||||||||    
T  39427960 ttgcagggttttgtctgtcctgctcaatatgagattaagtttctgcgattcataaatataacggcgattaggaaatccttgaatccccc 39428048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 25132835 - 25132877
Alignment:
Q  290 gattagggaatccttgaatccccccttccatctttgttggaatt 333  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    
T  25132835 gattagggaatccttgaatctcccctt-catctttgttggaatt 25132877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 19256822 - 19256864
Alignment:
Q  110 caaatcgtacgcaagtaataaagtagtaagttatcgtctccac 152  Q
    ||||||||||  ||||||||||||||||||||||||| |||||    
T  19256822 caaatcgtacttaagtaataaagtagtaagttatcgtatccac 19256864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 19884091 - 19884061
Alignment:
Q  122 aagtaataaagtagtaagttatcgtctccac 152  Q
    |||||||||||||||||||||||||||||||    
T  19884091 aagtaataaagtagtaagttatcgtctccac 19884061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 31318436 - 31318466
Alignment:
Q  122 aagtaataaagtagtaagttatcgtctccac 152  Q
    |||||||||||||||||||||||||||||||    
T  31318436 aagtaataaagtagtaagttatcgtctccac 31318466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 17836968 - 17837036
Alignment:
Q  266 tttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    ||||||||||| | |  |||| | ||||||||||||||||||||||| ||| | ||||||||||||||||    
T  17836968 tttgtgattcagattattaaccatgattagggaatccttgaatccccgctt-cgtctttgttggaattaa 17837036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 25664822 - 25664918
Alignment:
Q  95 aattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt-atcgtctccactgagattgtcgttaaaatcagtaattagcggaatttatt 191  Q
    |||||||||||||| |||||| ||  ||||||||||||||||||||| ||| |||| |  | |||||||||| || || |||||||||| ||| ||||    
T  25664822 aattggcaagtgcaccaaatcatat-caagtaataaagtagtaagttaatcatctcgatagggattgtcgttcaactcggtaattagcgaaatctatt 25664918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 25778965 - 25778861
Alignment:
Q  99 ggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaaata 198  Q
    |||||||||| | |||| ||| ||||||||||||| |||||||||| |||| ||  |||||||| || || || ||| |||| || ||||||| |||||     
T  25778965 ggcaagtgcagccaatcatactcaagtaataaagtggtaagttatcatctcaacaaagattgtc-ttcaactcggtagttagtggtatttatttgaaatc 25778867  T
Q  199 aaataa 204  Q
    ||||||    
T  25778866 aaataa 25778861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 28411594 - 28411532
Alignment:
Q  174 taattagcggaatttattagaaataaaataatttaataagagatgaagtcgtttgcagggtttta 238  Q
    |||||||||||||||||||||||||| | ||||  | |||||||||||| ||||| || ||||||    
T  28411594 taattagcggaatttattagaaataacaaaatt--aaaagagatgaagtggtttgtagtgtttta 28411532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 15415905 - 15415949
Alignment:
Q  121 caagtaataaagtagtaagttatcgtctccactgagattgtcgtt 165  Q
    |||||||||||  ||||||||||||||||||  ||||||||||||    
T  15415905 caagtaataaaacagtaagttatcgtctccatagagattgtcgtt 15415949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 34522176 - 34522129
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt 141  Q
    |||||||||||||||| |||||||||  ||||||||||| |||||||||    
T  34522176 gaaattggcaagtgcaccaaatcgta-acaagtaataaaatagtaagtt 34522129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 6887057 - 6887165
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttatta 192  Q
    ||||||||||||  || |||||| ||| |||||| |||| ||||||||||||||||||||   |||||||||| || |  ||||||||||||||||||||    
T  6887057 gaaattggcaaggacaccaaatcatacccaagtattaaattagtaagttatcgtctccacaaggattgtcgttcaacttggtaattagcggaatttatta 6887156  T
Q  193 gaaataaaa 201  Q
    |||||||||    
T  6887157 gaaataaaa 6887165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 8541839 - 8541698
Alignment:
Q  198 aaaataatttaat---aagagatgaagtcgtttgcagggttttacatgtccttctcaatgcgagattagatt-ttgtgattcataattataacgacgatt 293  Q
    |||||||||||||   |||||||||||| ||||||||| |||||  | | || | |||||||||||||| || |||||||| | || |||||||| ||||    
T  8541839 aaaataatttaattaaaagagatgaagtggtttgcaggattttaattattctgcccaatgcgagattaggttgttgtgattgaaaagtataacgaagatt 8541740  T
Q  294 agggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    ||||||||| ||||||||| || |  ||||||||||||||||    
T  8541739 agggaatccatgaatcccctctcctttctttgttggaattaa 8541698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 23951592 - 23951688
Alignment:
Q  241 tgtccttctcaatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaattt 338  Q
    |||||| | ||||| |||||||| ||| ||||||||||  | ||| | ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  23951592 tgtcctgcccaatgtgagattaggttt-gtgattcatatatttaatggcgattagggaatccttgaatcaccccttccttctttgttggaattaattt 23951688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 27084567 - 27084647
Alignment:
Q  251 aatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaa 331  Q
    ||||| ||||||  ||||||||||||||  |||||||||||||| ||||||||||||||||||||||  |||||| |||||    
T  27084567 aatgcaagattatgttttgtgattcataggtataacgacgattaaggaatccttgaatccccccttctgtctttgatggaa 27084647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 370
Target Start/End: Original strand, 28290334 - 28290481
Alignment:
Q  225 tttgcagggttttacatgtccttctcaatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccc--cttccatct 322  Q
    |||| |||||||||  |||||| | ||||| |||||||| |||||||||||| || | ||||| ||||||||||| ||||||| |||||  | ||| | |    
T  28290334 tttgtagggttttaattgtcctgcccaatgtgagattagtttttgtgattcagaagtttaacggcgattagggaaaccttgaaccccccaacatccgtat 28290433  T
Q  323 ttgttggaattaatttggttgattgttagtttatgacctgcctttcga 370  Q
    | |||| || ||| | |||||||| |||||||||||| || |||||||    
T  28290434 tagttgcaactaactcggttgattattagtttatgacatgtctttcga 28290481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 16048779 - 16048862
Alignment:
Q  250 caatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    ||||||||||||| | ||||||||||| |  | ||||| ||||||||||| ||||||||||||||||  | |||||||||||||||    
T  16048779 caatgcgagatta-agtttgtgattcagaggtgtaacggcgattagggaaaccttgaatcccccctt-tacctttgttggaattaa 16048862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 14140298 - 14140198
Alignment:
Q  100 gcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaaataa 199  Q
    |||| |||| |||||||||   |||||||| | |||||||||||| |||||||   |||||||||| || | || ||||||| ||||||||||||| |||    
T  14140298 gcaaatgcatcaaatcgtagaaaagtaatacaatagtaagttatcatctccacatggattgtcgttgaacttagaaattagcagaatttattagaagtaa 14140199  T
Q  200 a 200  Q
    |    
T  14140198 a 14140198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 18790107 - 18790061
Alignment:
Q  101 caagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtct 148  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||||    
T  18790107 caagtgcaccaaatcgtat-caagtaataaagtagtaagttatcgtct 18790061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 36317253 - 36317300
Alignment:
Q  102 aagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctc 149  Q
    ||||||| |||||||||| |||| |||||||||| |||||||||||||    
T  36317253 aagtgcatcaaatcgtactcaagcaataaagtagcaagttatcgtctc 36317300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 13581968 - 13582038
Alignment:
Q  241 tgtccttctcaatgcgagattagatt-ttgtgattcataattataacgacgattagggaatccttgaatcc 310  Q
    |||||| | |||||||||||||| || |||||||||| || | |||||||| |||| ||||||||||||||    
T  13581968 tgtcctacccaatgcgagattaggttattgtgattcagaagtgtaacgacgtttagagaatccttgaatcc 13582038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 13528979 - 13529008
Alignment:
Q  122 aagtaataaagtagtaagttatcgtctcca 151  Q
    ||||||||||||||||||||||||||||||    
T  13528979 aagtaataaagtagtaagttatcgtctcca 13529008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 13618518 - 13618547
Alignment:
Q  122 aagtaataaagtagtaagttatcgtctcca 151  Q
    ||||||||||||||||||||||||||||||    
T  13618518 aagtaataaagtagtaagttatcgtctcca 13618547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 24926852 - 24926893
Alignment:
Q  289 cgattagggaatccttgaatccccccttccatctttgttgga 330  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  24926852 cgattagggaatccttgaatcctctcttccttctttgttgga 24926893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 28900331 - 28900375
Alignment:
Q  290 gattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||    
T  28900331 gattagggaatccttgaatctcccctt-cgtctttgttggaattaa 28900375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 12957612 - 12957553
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaag-ttatcgtctccac 152  Q
    ||||||| ||||||||  ||||||||  ||||||||||||||||||| |||||||||||||    
T  12957612 gaaattgacaagtgcactaaatcgtaa-caagtaataaagtagtaagcttatcgtctccac 12957553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 7021 - 7115
Alignment:
Q  241 tgtccttctcaatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    |||||| ||||||| || |||||||||||||||||| || |||||||  || ||||||||||||||||||| | ||| |||||||||||||||||    
T  7021 tgtcctactcaatgtgatattagattttgtgattcaaaagtataacggtgaatagggaatccttgaatccctcattctatctttgttggaattaa 7115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 309
Target Start/End: Original strand, 18805843 - 18806055
Alignment:
Q  94 aaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattag 193  Q
    |||||| |||||||| |||||||||||||||||||||| ||||||||| |||||| ||||  |||| ||||| || | || || | ||  ||||||||||    
T  18805843 aaattgacaagtgcaccaaatcgtacgcaagtaataaaatagtaagttttcgtcttcacttggattatcgttcaacttagcaagttgcataatttattag 18805942  T
Q  194 aaataaaataatttaataagagatgaagtcgtttgcagggttttacatgtccttctcaatgcgagattagatt-ttgtgattcataattataacgacgat 292  Q
    || ||||| ||  ||  ||||||| |||| | |||||||||||||  |||||| |  |||||||||||||||| |||||||||| ||| ||||| || ||    
T  18805943 aagtaaaagaaaata--aagagataaagtag-ttgcagggtttta-ttgtcctgcctaatgcgagattagattgttgtgattcaaaatgataacaacaat 18806038  T
Q  293 tagggaatccttgaatc 309  Q
     ||| |||| |||||||    
T  18806039 aaggaaatctttgaatc 18806055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 366
Target Start/End: Complemental strand, 13709134 - 13709016
Alignment:
Q  249 tcaatgcgagatta-gattttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttgg-aattaatttggttgatt 346  Q
    |||||||||||||| | |||||||||||  || | |||||||||||||||||||||||||||||| |||   |||||||||| |||||| | | || |||    
T  13709134 tcaatgcgagattatgtttttgtgattcggaagtgtaacgacgattagggaatccttgaatcccctctt-tgtctttgttggaaattaactggattaatt 13709036  T
Q  347 gttagtttatgacctgcctt 366  Q
     |||||||||||| ||||||    
T  13709035 attagtttatgacttgcctt 13709016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 359
Target Start/End: Original strand, 22334288 - 22334421
Alignment:
Q  226 ttgcagggttttacatgtccttctcaatgcgagattagattttgt-gattcataattataacgacgattagggaatccttgaatccccccttccatcttt 324  Q
    |||||||||||||  ||| || | |||||||||||||| |||||| |||||| ||   |||||  ||||||||||||||| ||||||||| ||| |||||    
T  22334288 ttgcagggttttaattgttctgcccaatgcgagattaggttttgttgattcaaaagagtaacggtgattagggaatcctttaatcccccc-tccgtcttt 22334386  T
Q  325 gttggaattaatttggttgattgttagtttatgac 359  Q
    ||||||| ||| | | || ||| ||||||||||||    
T  22334387 gttggaactaactcgattaattattagtttatgac 22334421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 5637309 - 5637258
Alignment:
Q  283 taacgacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  5637309 taacgacgattagagaatccttgaatc-cccctttcatctttgttggaattaa 5637258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 21536418 - 21536521
Alignment:
Q  102 aagtgcaacaaatcgtacgcaagtaataaagtagtaagtta-tcgtctccactgagattgtcgttaaaatcagtaattagcggaattta-ttagaaataa 199  Q
    |||||||  ||||||||| ||| ||||||||||| |||||| || ||||||||| |||| |||||||| || ||||||||||||| ||| ||||||| ||    
T  21536418 aagtgcactaaatcgtac-caaataataaagtaggaagttaatcttctccactgggattttcgttaaactcggtaattagcggaacttatttagaaaaaa 21536516  T
Q  200 aataa 204  Q
    |||||    
T  21536517 aataa 21536521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 4091505 - 4091595
Alignment:
Q  244 ccttctcaatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    ||||| ||||||| |||| || ||||||||||| |  | |||||  |||||||||||| ||||||| ||||||||||||||| |||||||||    
T  4091505 ccttcccaatgcgtgatt-gagtttgtgattcagatatttaacggtgattagggaatcattgaatctccccttccatctttgatggaattaa 4091595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 2352143 - 2352212
Alignment:
Q  95 aattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgtt 165  Q
    ||||| |||||||| |||||||||  |||||||||||||||||||||||| |||||||   ||||||||||    
T  2352143 aattgacaagtgcatcaaatcgtaa-caagtaataaagtagtaagttatcatctccacatggattgtcgtt 2352212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 11466917 - 11467010
Alignment:
Q  101 caagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaa 195  Q
    |||||||| ||||||||| | |||||||||||||||| ||||| ||||||||   ||||||| || || | || ||||||| |||||||||||||    
T  11466917 caagtgcatcaaatcgtaag-aagtaataaagtagtaggttattgtctccacatggattgtcattcaacttagcaattagcagaatttattagaa 11467010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 11467095 - 11467148
Alignment:
Q  283 taacgacgattagggaatccttgaatccccccttccatctttgttggaattaat 336  Q
    |||||||||||||||||||||| |||||||  |||| |||| ||||||||||||    
T  11467095 taacgacgattagggaatccttaaatccccatttccgtcttagttggaattaat 11467148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 20347471 - 20347362
Alignment:
Q  250 caatgcgagattagattttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgtt 349  Q
    |||||| | |||||||||| ||||| | |  |||||| ||||||||||||||||  | ||||| ||||||||| | |||||||||| | | |||||| |     
T  20347471 caatgcaatattagattttttgatttagagatataacaacgattagggaatcctaaagtcccctcttccatctattttggaattaactcgattgattttc 20347372  T
Q  350 agtttatgac 359  Q
    ||||||||||    
T  20347371 agtttatgac 20347362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 22271054 - 22271142
Alignment:
Q  91 gtgaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt-atcgtctccactgagattgtcgttaaaatcagtaatta 179  Q
    |||||||||||||||||| |||||||| |  ||||||||| |||||||||| ||||||| ||  | |||||||||| || ||||||||||    
T  22271054 gtgaaattggcaagtgcatcaaatcgtgc-aaagtaataaggtagtaagttaatcgtcttcatagggattgtcgttcaactcagtaatta 22271142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 18494563 - 18494674
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaag-ttatcg-tctccactgagattgtcgttaaaatcagtaattagcggaatttat 190  Q
    |||||||||||||||| |||||||||  |||||||||| |||||||| |||| | ||||||| | |||||||||| || || ||||||||   || ||||    
T  18494563 gaaattggcaagtgcaccaaatcgta-acaagtaataaggtagtaagtttattgttctccacagggattgtcgttcaactcggtaattagaaaaaattat 18494661  T
Q  191 tagaaataaaata 203  Q
    |||||| ||||||    
T  18494662 tagaaagaaaata 18494674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 21236422 - 21236378
Alignment:
Q  121 caagtaataaagtagtaagttatcgtctccactgagattgtcgtt 165  Q
    |||||||||||||| ||||||||||||||||| || |||||||||    
T  21236422 caagtaataaagtaataagttatcgtctccacagaaattgtcgtt 21236378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 21544688 - 21544735
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt 141  Q
    |||||||||||||||| |||||||||  |||||||||||||||||||||    
T  21544688 gaaattggcaagtgcaccaaatcgta-acaagtaataaagtagtaagtt 21544735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 10925120 - 10925074
Alignment:
Q  101 caagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtct 148  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||||    
T  10925120 caagtgcaccaaatcgtat-caagtaataaagtagtaagttatcgtct 10925074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 22334185 - 22334260
Alignment:
Q  121 caagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaaa 196  Q
    |||||||||||||||||||||||| ||| |||  | |||||| || || |  ||||||||| ||||||||||||||    
T  22334185 caagtaataaagtagtaagttatcatcttcacataaattgtcattcaacttggtaattagctgaatttattagaaa 22334260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 8923216 - 8923246
Alignment:
Q  121 caagtaataaagtagtaagttatcgtctcca 151  Q
    |||||||||||||||||||||||||||||||    
T  8923216 caagtaataaagtagtaagttatcgtctcca 8923246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 20347606 - 20347573
Alignment:
Q  111 aaatcgtacgcaagtaataaagtagtaagttatc 144  Q
    ||||||||| ||||||||||||||||||||||||    
T  20347606 aaatcgtactcaagtaataaagtagtaagttatc 20347573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 2090958 - 2090994
Alignment:
Q  102 aagtgcaacaaatcgtacgcaagtaataaagtagtaa 138  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  2090958 aagtgcaccaaatcgtactcaagtaataaagtagtaa 2090994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 4091354 - 4091401
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt 141  Q
    |||||||||||||| | |||||||||  |||||||||||||||||||||    
T  4091354 gaaattggcaagtgtaccaaatcgtaa-caagtaataaagtagtaagtt 4091401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 4995916 - 4995944
Alignment:
Q  121 caagtaataaagtagtaagttatcgtctc 149  Q
    |||||||||||||||||||||||||||||    
T  4995916 caagtaataaagtagtaagttatcgtctc 4995944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 7494547 - 7494500
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt 141  Q
    |||||||||||||||| |||||||||  ||||||||||| |||||||||    
T  7494547 gaaattggcaagtgcaccaaatcgta-acaagtaataaattagtaagtt 7494500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 378
Target Start/End: Original strand, 12971458 - 12971567
Alignment:
Q  268 tgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgacctgccttt 367  Q
    |||| |||| || ||||| | ||||||| ||||||||||||||||| |||| | |||||||||||||| | |||||||| ||||||||||||||  ||||    
T  12971458 tgtggttcagaagtataatggcgattagagaatccttgaatccccc-ttccttatttgttggaattaactcggttgattattagtttatgacctaacttt 12971556  T
Q  368 cgaattaagaa 378  Q
    ||| |||||||    
T  12971557 cgatttaagaa 12971567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 17196110 - 17196215
Alignment:
Q  99 ggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaaata 198  Q
    ||||| |||| | |||||||| |||||||||||||||||||||||| | ||||| | |||||| ||| || ||||||||||| ||| || ||| |||| |    
T  17196110 ggcaactgcaccgaatcgtactcaagtaataaagtagtaagttatcctatccacagggattgttgtttaactcagtaattagaggatttaatttgaaaga 17196209  T
Q  199 aaataa 204  Q
    ||||||    
T  17196210 aaataa 17196215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 21604645 - 21604782
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttatta 192  Q
    |||||||||||||| | |||||| ||||||| ||||||||||||||| |||| ||| |||  ||||||||| | || |   |||||||||||||||| ||    
T  21604645 gaaattggcaagtgaatcaaatcttacgcaaataataaagtagtaagctatcatctacacaaagattgtcgctcaactagataattagcggaatttacta 21604744  T
Q  193 gaaataaaataatttaataagagatgaagtcgtttgcagg 232  Q
     |||||| | ||||  | ||||||||||||  ||||||||    
T  21604745 taaataatagaatt--aaaagagatgaagtgatttgcagg 21604782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 368
Target Start/End: Complemental strand, 16440458 - 16440361
Alignment:
Q  270 tgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgacctgcctttc 368  Q
    ||||||| | || ||||||| ||||||| |||||||||||||   |||| ||||||||||||||||  ||||||||| |||||||||||| || |||||    
T  16440458 tgattcagatttgtaacgacaattagggtatccttgaatccctt-ttccgtctttgttggaattaacgtggttgattattagtttatgacatgtctttc 16440361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 378
Target Start/End: Original strand, 12967106 - 12967194
Alignment:
Q  289 cgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgacctgcctttcgaattaagaa 378  Q
    ||||||| ||||||||||||||||| |||  | |||||||||||||| | |||| ||| ||||||||||||||  ||||||| |||||||    
T  12967106 cgattagagaatccttgaatccccc-ttcattatttgttggaattaactcggttaattattagtttatgacctaactttcgatttaagaa 12967194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 378
Target Start/End: Original strand, 12969292 - 12969380
Alignment:
Q  289 cgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgttagtttatgacctgcctttcgaattaagaa 378  Q
    ||||||| ||||||||||||||||| |||  | |||||||||||||| | |||| ||| ||||||||||||||  ||||||| |||||||    
T  12969292 cgattagagaatccttgaatccccc-ttcattatttgttggaattaactcggttaattattagtttatgacctaactttcgatttaagaa 12969380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 26498878 - 26498970
Alignment:
Q  270 tgattcataattataacgacgattagggaatccttgaatcc---ccccttccatctttgttggaattaatttggttgattgttagtttatgac 359  Q
    ||||||| || |||||||||||||| |||||||||||||     |||||| | |||||||| |||| || |||||||||| ||||||||||||    
T  26498878 tgattcagaagtataacgacgattaaggaatccttgaatgatatcccctttcttctttgttagaatcaacttggttgattattagtttatgac 26498970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 16174380 - 16174459
Alignment:
Q  121 caagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaaataaa 200  Q
    ||||||||||||||||| |||||||| |||||  ||||||| ||| || | || ||||||  ||||||||||||| ||||    
T  16174380 caagtaataaagtagtaggttatcgtgtccacatagattgttgttcaacttagcaattagaagaatttattagaagtaaa 16174459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 22557856 - 22557955
Alignment:
Q  102 aagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcggaatttattagaaataaaa 201  Q
    ||||||| |||||||||   |||||||||||||||||||||| |||| |||  ||||| | ||| || | ||| ||||| |||||||||| ||| |||||    
T  22557856 aagtgcaccaaatcgtaaaaaagtaataaagtagtaagttatagtcttcacaaagatttttgttcaacttagtgattagaggaatttatttgaagtaaaa 22557955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 17320835 - 17320778
Alignment:
Q  94 aaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccac 152  Q
    ||||||||||||||| |||||||||   ||||||||||||||| |||||| ||||||||    
T  17320835 aaattggcaagtgcaccaaatcgtaat-aagtaataaagtagttagttattgtctccac 17320778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 8037097 - 8037013
Alignment:
Q  96 attggcaagtgcaacaaatcgtacgcaagtaataaagtagtaag-ttatcgtctccactgagattgtcgttaaaatcagtaattag 180  Q
    |||||||||||||  ||||||||  ||||||||||||||||||| ||| |||||||||  |||||||| || || || ||||||||    
T  8037097 attggcaagtgcactaaatcgtaa-caagtaataaagtagtaagtttaccgtctccacatagattgtcattcaactcggtaattag 8037013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 13194333 - 13194289
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaa 138  Q
    |||||||||||||||| |||||||||  ||||||||||||||||||    
T  13194333 gaaattggcaagtgcaccaaatcgta-acaagtaataaagtagtaa 13194289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 17859101 - 17859182
Alignment:
Q  250 caatgcgagattagattt-tgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttgga 330  Q
    |||||| ||||||| ||| ||||||||| |  | |||||| ||||||||||||||||||||||   |||| |||||||||||    
T  17859101 caatgcaagattaggtttgtgtgattcagatgtgtaacgatgattagggaatccttgaatcccatattccttctttgttgga 17859182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 15576245 - 15576198
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt 141  Q
    |||||||||||||||| |||||||||  |||||||||||||||| ||||    
T  15576245 gaaattggcaagtgcatcaaatcgta-acaagtaataaagtagtcagtt 15576198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 31275351 - 31275294
Alignment:
Q  94 aaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctcca 151  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  31275351 aaattggcaagtgcaccaaatcgtaaacaagtaataaagtagtaagttatcgtctcca 31275294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 20518290 - 20518372
Alignment:
Q  249 tcaatgcgagattagattttg-tgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaa 331  Q
    ||||||| ||||||| ||| | |||||||||| | |||||||||||| ||||||||||||||||||||| |||||||| |||||    
T  20518290 tcaatgcaagattaggtttggatgattcataagtgtaacgacgattatggaatccttgaatcccccctt-catctttgctggaa 20518372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 25461298 - 25461248
Alignment:
Q  101 caagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctcca 151  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  25461298 caagtgcatcaaattgtacacaagtaataaagtagtaagttatcgtctcca 25461248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 24438661 - 24438608
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgt 146  Q
    |||||||  ||||||| |||||||||||||||||||||| ||||||||||||||    
T  24438661 gaaattgcaaagtgcatcaaatcgtacgcaagtaataaaatagtaagttatcgt 24438608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 21243318 - 21243240
Alignment:
Q  102 aagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattag 180  Q
    ||||||| ||||| ||||  |||||||||||||||||||||||| |||||   | ||||||||| || |||||||||||    
T  21243318 aagtgcaccaaattgtactaaagtaataaagtagtaagttatcgactccataaacattgtcgttcaactcagtaattag 21243240  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 23854055 - 23854140
Alignment:
Q  96 attggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctccactgagattgtcgttaaaatcagtaattagcg 182  Q
    |||| |||||||| |||||| ||  |||||||||||||||||| |||| |||||||| | |||||||||| || || ||||| ||||    
T  23854055 attgacaagtgcaccaaatcataa-caagtaataaagtagtaaattattgtctccacagggattgtcgttcaactcggtaatcagcg 23854140  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 27416273 - 27416317
Alignment:
Q  290 gattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||||    
T  27416273 gattagggaatccttgaatccacactt-catctttgttggaattaa 27416317  T

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Target: scaffold0280 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 358
Target Start/End: Complemental strand, 17366 - 17258
Alignment:
Q  250 caatgcgagattagatt-ttgtgattcataattataacgacgattagggaatccttgaatccccccttccatctttgttggaattaatttggttgattgt 348  Q
    ||||||||||||| ||| ||||| |||  || ||||||  |||||| ||||||||||||| | ||||||| |||||  ||||||||| |||||||||| |    
T  17366 caatgcgagattatattgttgtgcttctgaagtataacagcgattatggaatccttgaat-ctcccttccgtctttcgtggaattaacttggttgattat 17268  T
Q  349 tagtttatga 358  Q
    |||| |||||    
T  17267 tagtgtatga 17258  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 10804 - 10850
Alignment:
Q  105 tgcaacaaatcgtacgcaagtaataaagtagtaagttatcgtctcca 151  Q
    |||| |||||||||  |||||||||||||||||||||||||| ||||    
T  10804 tgcaccaaatcgtagtcaagtaataaagtagtaagttatcgtttcca 10850  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 7223 - 7172
Alignment:
Q  283 taacgacgattagggaatccttgaatccccccttccatctttgttggaattaa 335  Q
    |||| |||||||| ||||||| |||||||||||| |||| |||||||||||||    
T  7223 taacaacgattagagaatcctcgaatcccccctt-catcattgttggaattaa 7172  T

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Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 7413 - 7366
Alignment:
Q  93 gaaattggcaagtgcaacaaatcgtacgcaagtaataaagtagtaagtt 141  Q
    ||||||| |||||||| |||||||||  |||||||||||||||||||||    
T  7413 gaaattgacaagtgcaccaaatcgtaa-caagtaataaagtagtaagtt 7366  T

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