View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18811_high_5 (Length: 399)
Name: NF18811_high_5
Description: NF18811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18811_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 35 - 383
Target Start/End: Original strand, 34070690 - 34071045
Alignment:
| Q |
35 |
aattggagggttgtggcgtgacggtggcatatgatggaaggaagnnnnnnnnn-----gtagaatcgattcgccgcatataaaacggtggtggtgacttt |
129 |
Q |
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| T |
34070690 |
aattggagggttgtggcgtgacggtggcatatgatggaaggaagaaagaaaaaaaaaagtagaatcgattcgccgcatataaaacggtggtggtgacttt |
34070789 |
T |
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| Q |
130 |
tcaccacaaacagacagggaccaccttccatttaacgattcttatttcagtgattcctatttgcatttggacattattgtctctttcgnnnnnnnnnnnn |
229 |
Q |
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| T |
34070790 |
tcaccacaaacagacagggaccaccttccatttaacgattcttatttgagtgattcctatttgcatttggacattattgtctctttcgaaaaaaagaaaa |
34070889 |
T |
|
| Q |
230 |
ncaatcacactc-taaacgatgatggatgattgttcaataaattgtttactt-actgaaaatacgtaagtgcaattcctgtttactgcttagaattattc |
327 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
34070890 |
acaatcacactcttaaacgatgatggatgattgttcaataaacactttacttaactgaaaatacttaagtgcaattcctgtttactgcttagaattgttc |
34070989 |
T |
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| Q |
328 |
atgtgttttatcaacataattgttaggttaccgacatgctacaaaggccgaacact |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34070990 |
atgtgttttatcaacataattgttaggttaccgacatgctacaaaggcagaacact |
34071045 |
T |
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