View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18811_high_8 (Length: 240)
Name: NF18811_high_8
Description: NF18811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18811_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2267642 - 2267878
Alignment:
| Q |
1 |
ttgttctagtggctagtctctgatactcagttttaagacttgaatgagcaacttgttgctgctttttagaccaccatgaaaataaactagtttcaaagta |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2267642 |
ttgttccagtggctagtctctgatactcagttttaagacttgaatgagcaacttgttgctgctttttagaccaccatgaaaataaactagtttcaaagta |
2267741 |
T |
|
| Q |
101 |
tgtgctagaccctgaattagagcacctgtcatcagggttagatgcccaattggcatctcaaaatacctgtaaatgagatgactggtctggcagtaaaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2267742 |
tgtgctagaccctgaattagagcacctgtcatcagggttggatgcccaattggcatctcaaaatacctgtaaatgagatgactggtctggcagtaaaaga |
2267841 |
T |
|
| Q |
201 |
aggccatgatcagtggagcctttaagataccgccgaa |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2267842 |
aggccatgatcagtggagcctttaagataccgccgaa |
2267878 |
T |
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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 650476 - 650355
Alignment:
| Q |
103 |
tgctagaccctgaattagagcacctgtcatcagggttagatgcccaattggcatctcaaaatacctgt-aaatgagatgactggtctggcagtaaaagaa |
201 |
Q |
| |
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||||||||||| || |||| |||||||||||||||| |||| ||||||||||||| |||||||||||| ||| || |||||| |||| | |||||||| |
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| T |
650476 |
tgctagaccctaaagtagatcacctgtcatcagggtcagattcccaattggcatcgcaaaatacctgtaaaacgatgtgactgatctgtcggtaaaagat |
650377 |
T |
|
| Q |
202 |
ggccatgatcagtggagccttt |
223 |
Q |
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||||||||||||| |||||||| |
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| T |
650376 |
ggccatgatcagttgagccttt |
650355 |
T |
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