View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18811_low_3 (Length: 530)
Name: NF18811_low_3
Description: NF18811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18811_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 53491722 - 53491223
Alignment:
| Q |
19 |
ctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgctttttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491722 |
ctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgctttttta |
53491623 |
T |
|
| Q |
119 |
acagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53491622 |
acagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttac |
53491523 |
T |
|
| Q |
219 |
aaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491522 |
aaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataac |
53491423 |
T |
|
| Q |
319 |
tgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491422 |
tgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatg |
53491323 |
T |
|
| Q |
419 |
ttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491322 |
ttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 53499315 - 53498819
Alignment:
| Q |
19 |
ctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgctttttta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
53499315 |
ctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactccttttatgtacgattgcatttatattttagtccgcttattta |
53499216 |
T |
|
| Q |
119 |
acagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttac |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53499215 |
acagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttac |
53499116 |
T |
|
| Q |
219 |
aaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
53499115 |
aaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagca-aaaatacgtgctgagttagattctagagatagc |
53499017 |
T |
|
| Q |
319 |
tgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatg |
418 |
Q |
| |
|
| |||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
53499016 |
tactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatg |
53498917 |
T |
|
| Q |
419 |
ttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
518 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
53498916 |
ttgtcctgttgttgctcttatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 117 - 463
Target Start/End: Complemental strand, 16070303 - 16069958
Alignment:
| Q |
117 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
217 |
acaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
316 |
Q |
| |
|
||||| | |||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
|
| Q |
317 |
actgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatcta |
416 |
Q |
| |
|
||| ||||| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| | |
|
|
| T |
16070104 |
actattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaa |
16070005 |
T |
|
| Q |
417 |
tgttgtcttgttgttgctcttatattcttacatatgtcattttgctt |
463 |
Q |
| |
|
|||||| | || |||| ||| ||||||| ||||||||||| ||||| |
|
|
| T |
16070004 |
tgttgttatattattgcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
339 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
377 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 109 - 410
Target Start/End: Original strand, 45355140 - 45355440
Alignment:
| Q |
109 |
cgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattcc |
208 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
45355140 |
cgctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcc |
45355239 |
T |
|
| Q |
209 |
agtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattc |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||| | ||| |||||||||| |||| | |
|
|
| T |
45355240 |
tgtgccttacaaagatgctgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgc |
45355338 |
T |
|
| Q |
309 |
tagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcag |
408 |
Q |
| |
|
||||| |||| |||||||| | |||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
45355339 |
cagagacaactattctcctggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcag |
45355438 |
T |
|
| Q |
409 |
gt |
410 |
Q |
| |
|
|| |
|
|
| T |
45355439 |
gt |
45355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University