View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18811_low_4 (Length: 437)
Name: NF18811_low_4
Description: NF18811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18811_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 22 - 420
Target Start/End: Original strand, 48813599 - 48813997
Alignment:
| Q |
22 |
gtaccaatttcaattacttacgaattcccctgtgctagttgttttcataggtgatagtgaacattgataaatattctcacgttaaccggctaattttttc |
121 |
Q |
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| T |
48813599 |
gtaccaatttcaattacttacgaattcccctgtgctagttgttttcataggtgataatgaacattaataaatattctcacgttaaccggctaattttttc |
48813698 |
T |
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| Q |
122 |
aaaattaaatcaaaccatctacatttgattggcaagtaagtataagaaattatgattttttattcctttcacaatgctggactggatcttatattttata |
221 |
Q |
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| T |
48813699 |
aaaattaaatcaaaccatctacatttgattggcaagtaagtataagaaattatgattttttattcctttcacaatgctggactggatcttatattttata |
48813798 |
T |
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| Q |
222 |
tgattcaggttagcaaaactatctgaaggccagttgattgatggaaggcttgaatgcctgtatcatggatggcaattcgaaggcgaagggaaatgtgtga |
321 |
Q |
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| T |
48813799 |
tgattcaggttagcaaaactatctgaaggccagttgattgatggaaggcttgaatgcctgtatcatggatggcaattcgaaggcgaagggaaatgtgtga |
48813898 |
T |
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| Q |
322 |
agatacctcaggtaggctactgactttagagttctactcacctatatcatgaatgtccttatatggtttgaggctaacaagtaacaagtaataataact |
420 |
Q |
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| T |
48813899 |
agatacctcaggtaggctactgactttagagttctactcacctatatcatgaatgtccttatatggtttgaggctaacaagtaacaagtaataataact |
48813997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 21295174 - 21295142
Alignment:
| Q |
1 |
ttataattagggacggagggagtaccaatttca |
33 |
Q |
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| T |
21295174 |
ttataattagggacggagggagtactaatttca |
21295142 |
T |
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