View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18812_high_1 (Length: 446)
Name: NF18812_high_1
Description: NF18812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18812_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Complemental strand, 37859926 - 37859511
Alignment:
| Q |
12 |
atgaaaaaatgaaagaagaaataaagcaacgaaaattgcttccctctcatggctttagtgtaaaaaatttacgcttatcactcgagatattaaacaagaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
37859926 |
atgaaaaaatgaaagaagaaataaagcaacgaaaattgcttccctctcatggctttagtgtaaaaaatttacgcttatcactcaagatattaaaaaagaa |
37859827 |
T |
|
| Q |
112 |
aactaggctaattgcttggaaggaagatgcaactaatgcttatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagcattt |
211 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37859826 |
aactcggctaattgcttggaaggaagatgcaactaatgcttatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagcgt-- |
37859729 |
T |
|
| Q |
212 |
ggtggtttgattaggaattccaacggtgattaccaatgtggcttccacggtaatattggctattccattagcctccatgccgagatcatggctttgattc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37859728 |
ggtggtttgattaggaattccaacggtgattacaaatgtggcttccacggtaatattggctattccattagcctccatgccgagatcatggctttgattc |
37859629 |
T |
|
| Q |
312 |
aagggatctgaatgtgtttggaggcaagtttaaggaatattatctattacattgacactttgcaactatccacccgatgcagcttgcgaatgtttcgaaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
37859628 |
aagggatctgaatgtgtttggaggcaagtttaaggaatattatctattacattgacactttgcaattatccacccaatgcagcttgcgaatgtttcgaaa |
37859529 |
T |
|
| Q |
412 |
ctccattatggcaatgag |
429 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37859528 |
ctccattatggcaatgag |
37859511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Complemental strand, 18102317 - 18101903
Alignment:
| Q |
12 |
atgaaaaaatgaaagaagaaataaagcaacgaaaattgcttccctctcatggctttagtgtaaaaaatttacgcttatcactcgagatattaaacaagaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
18102317 |
atgaaaaaatgaaagaagaaataaagcaacgaaaattgcttccctctcatggctttagtgtaaaaaatttacgcttatcactcaagatattaaaaaagaa |
18102218 |
T |
|
| Q |
112 |
aactaggctaattgcttggaaggaagatgcaactaatgcttatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagcattt |
211 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18102217 |
a-ctcggctaattgcttggaaggaagatgcaactaatgcttatgttttcaatttcgatggtcgctctcgctcccaaaccaatccaggtatggcagcgt-- |
18102121 |
T |
|
| Q |
212 |
ggtggtttgattaggaattccaacggtgattaccaatgtggcttccacggtaatattggctattccattagcctccatgccgagatcatggctttgattc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18102120 |
ggtggtttgattaggaattccaacggtgattacaaatgtggcttccacggtaatattggctattccattagcctccatgccgagatcatggctttgattc |
18102021 |
T |
|
| Q |
312 |
aagggatctgaatgtgtttggaggcaagtttaaggaatattatctattacattgacactttgcaactatccacccgatgcagcttgcgaatgtttcgaaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
18102020 |
aagggatctgaatgtgtttggaggcaagtttaaggaatattatctattacattgacactttgcaattatccacccaatgcagcttgcgaatgtttcgaaa |
18101921 |
T |
|
| Q |
412 |
ctccattatggcaatgag |
429 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18101920 |
ctccattatggcaatgag |
18101903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University