View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18812_high_10 (Length: 227)
Name: NF18812_high_10
Description: NF18812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18812_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 37303448 - 37303667
Alignment:
| Q |
6 |
actacaaatattaaaaaatatgttgcataagttctaatacttatgaagataagaaattattttaattatgtaaaggttgtgtctgcgtataccacatcca |
105 |
Q |
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| T |
37303448 |
actacaaatattaaaaaatatgttgcataagttctaatacttatgaagataagaaattattttaattatgtaaaggttgtgtctgcgta--ccacatcca |
37303545 |
T |
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| Q |
106 |
tgagaatctcaacaaggttaacatgattcatgatgacaacagaagattctcttgaagcttcacatttaaaaccagctggttttggaccaattcctctagg |
205 |
Q |
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| T |
37303546 |
tgagaatctcaacaaggttaacatgattcatgatgacaacagaagattctcttgaagcttcacatttaaaaccagctggttttggaccaattcctctagg |
37303645 |
T |
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| Q |
206 |
aaaagacctaacatattcctcc |
227 |
Q |
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| T |
37303646 |
aaaagacctaacatattcctcc |
37303667 |
T |
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Back To:
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 16826395 - 16826265
Alignment:
| Q |
93 |
tataccacatccatgagaatctcaacaaggttaacatgattcatgatgacaacagaagattctcttgaagcttcacatttaaaaccagctggttttggac |
192 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| || |||||||||||||| |||||| ||||| || | |
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| T |
16826395 |
tataccacatccatgagaatctcaacaaggttgacatgattcatgataacaacgctagattccctcgaagcttcacatttgaaaccattaggtttaggtc |
16826296 |
T |
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| Q |
193 |
caattcctctaggaaaagacctaacatattc |
223 |
Q |
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| T |
16826295 |
caatcccacgaggaaacgacctaacatattc |
16826265 |
T |
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