View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18812_high_3 (Length: 423)
Name: NF18812_high_3
Description: NF18812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18812_high_3 |
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| [»] scaffold0006 (4 HSPs) |
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| [»] scaffold0632 (2 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 21824694 - 21824553
Alignment:
| Q |
19 |
actttgttgactatagaaacctatcatattatcagtttttagtcctacgatagtttttgtgatattattagattcacttgatcataggtttgttacttgt |
118 |
Q |
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| T |
21824694 |
actttgttgactatagaaacctatcatattatcagtttttgttccgacgatagtttttgtgatgttattagattcacttgatcataggtttgttacctgt |
21824595 |
T |
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| Q |
119 |
atatatatgtaactccttgcaatcaatgctattcaacctttt |
160 |
Q |
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| T |
21824594 |
atatatatgtaactccttgtaagcaatgctatccaacctttt |
21824553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 21823814 - 21823712
Alignment:
| Q |
263 |
gaagagaagaaccagagaaatccttttcttaggcaatttataagtatagacgtagcagagcagataccggtttgtggattgaaagtctttgttaaaaagt |
362 |
Q |
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|||||||||| |||| ||| ||| ||| || |||||| ||||||||||||||| |||| | ||||||||||||||||||||| |||||| ||||| |
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| T |
21823814 |
gaagagaagagttagaggaattcttatctaagccaatttgaaagtatagacgtagcgtagcaaag-ccggtttgtggattgaaagtccttgttagaaagt |
21823716 |
T |
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| Q |
363 |
aaag |
366 |
Q |
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|||| |
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| T |
21823715 |
aaag |
21823712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 400
Target Start/End: Complemental strand, 200780 - 200665
Alignment:
| Q |
284 |
ccttttcttaggcaatttataagtatagacgtagcagagcagataccggtttgtggattgaaagtctttgttaaaaagtaaagtcatctaaggtaagggt |
383 |
Q |
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| T |
200780 |
ccttttcttagccaatttcaaactatagacgtagctgagcagataccgagttgtggattgaaagtctttgttagaaaatgaag-cacccaaggtaagggt |
200682 |
T |
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| Q |
384 |
tttttctccataggttc |
400 |
Q |
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|||||| ||||| |||| |
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| T |
200681 |
tttttccccatacgttc |
200665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 89525 - 89641
Alignment:
| Q |
92 |
tcacttgatcataggtttgttacttgtatatatatgtaactccttgcaatcaatgctattcaaccttttgaacactcagtatcgtgtagcacttataaat |
191 |
Q |
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||||||||||||||| |||||||||| ||| ||||| || |||||||| |||||| || ||||| | ||||||| || ||||||||| | || |||| |
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| T |
89525 |
tcacttgatcataggattgttacttg--tatttatgtgacgccttgcaagcaatgcaatacaacc-tctgaacacccattatcgtgtaacttttgtaaac |
89621 |
T |
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| Q |
192 |
tagagaatcaaaatataacc |
211 |
Q |
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||||||| |||| ||||||| |
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| T |
89622 |
tagagaaccaaagtataacc |
89641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 366
Target Start/End: Original strand, 89646 - 89762
Alignment:
| Q |
248 |
actcacaaattagaagaagagaagaaccagagaaatccttttcttaggcaatttataagtatagacgtagcagagcagataccggtttgtggattgaaag |
347 |
Q |
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|||||||||||| ||||||||| || | ||| | |||||||||| | || ||| || ||||||| |||||||| ||||||||| ||||||| | | || |
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| T |
89646 |
actcacaaattaaaagaagagaggacctagata--tccttttcttggccattttcaaactatagacatagcagagaagataccggcttgtggactaagag |
89743 |
T |
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| Q |
348 |
tctttgttaaaaagtaaag |
366 |
Q |
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||||||||| ||| ||||| |
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| T |
89744 |
tctttgttagaaattaaag |
89762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 200934 - 200867
Alignment:
| Q |
90 |
attcacttgatcataggtttgttacttgtatatatatgtaactccttgcaatcaatgctattcaaccttt |
159 |
Q |
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||||||||||||||||| || ||||||| ||| ||||| |||||||| || |||||| ||||||||||| |
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| T |
200934 |
attcacttgatcataggattattacttg--tatttatgtgactccttgtaagcaatgcaattcaaccttt |
200867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 4286 - 4344
Alignment:
| Q |
19 |
actttgttgactatagaaacctatcatattatcagtttttagtcctacgatagtttttg |
77 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |
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| T |
4286 |
actttgttgactatagaaacctatcatattattagtttttggtcatacgatagtttttg |
4344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 4346 - 4389
Alignment:
| Q |
108 |
ttgttacttgtatatatatgtaactccttgcaatcaatgctatt |
151 |
Q |
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| T |
4346 |
ttgttacttgtatatatatgtaactccttgcaagcaatgctatt |
4389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 80536 - 80638
Alignment:
| Q |
263 |
gaagagaagaaccagagaaatccttttcttaggcaatttataagtatagacgtagcagagcagataccggtttgtggattgaaagtctttgttaaaaagt |
362 |
Q |
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|||||||||| | |||| |||| || ||| || |||||| ||||||||||||||| |||| | ||||||| ||||||||||||| |||||| ||||| |
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| T |
80536 |
gaagagaagagctagaggaatctttatctaagccaatttgaaagtatagacgtagcgtagcaaag-ccggtttttggattgaaagtccttgttagaaagt |
80634 |
T |
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| Q |
363 |
aaag |
366 |
Q |
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|||| |
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| T |
80635 |
aaag |
80638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 24056289 - 24056240
Alignment:
| Q |
374 |
aggtaagggttttttctccataggttcttcctaaataccaggaccttgtt |
423 |
Q |
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||||||| |||||||||||||| |||||| |||||| | ||||||||||| |
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| T |
24056289 |
aggtaagagttttttctccatacgttcttactaaatgctaggaccttgtt |
24056240 |
T |
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