View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18812_high_4 (Length: 400)
Name: NF18812_high_4
Description: NF18812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18812_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 31264455 - 31264086
Alignment:
| Q |
20 |
ctatgcccacccgaacaattctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31264455 |
ctatgcccacccgaacaattctcagtcccaaacatgaatgaataccatagagaatgagaatactgcatgtaagagtctagacgtcctaggaaaattatac |
31264356 |
T |
|
| Q |
119 |
gttaacatggccatagaagacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaa |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31264355 |
gttaacatggccatagaagaccaaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaa |
31264256 |
T |
|
| Q |
219 |
cactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgtaatattggaaagatggtaatttat |
318 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31264255 |
cactcaaatgcaaatttgtcgcaacagaagtctgaattcaaggaaagttgaaagacatggaatagagcatctccgtaatattggaaagatggtaatttat |
31264156 |
T |
|
| Q |
319 |
ccgataagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatatt |
388 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31264155 |
ccgatgagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatatt |
31264086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 22049583 - 22049815
Alignment:
| Q |
20 |
ctatgcccacccgaacaattctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatac |
118 |
Q |
| |
|
|||||||||| |||| ||||||| || |||||||||| |||| | ||||||||| || ||| ||||| |||||||| ||||| | ||||| | ||| |
|
|
| T |
22049583 |
ctatgcccacaagaacgattctcattcgcaaacatgaaccaatatcgtagagaatgggaataccgcatggaagagtctgcacgtcttgggcaatctttac |
22049682 |
T |
|
| Q |
119 |
gttaacatggccatagaagacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaa |
218 |
Q |
| |
|
| |||| ||||| |||| ||| |||||||||||||||||| || ||||||||||| |||| |||||| |||| ||| |||| |||||||| ||||||| |
|
|
| T |
22049683 |
gccaacaaggccaaagaaaaccaaaacaacgttcatcagaaatcacaagaggcagtaatgaatcgctcgaactggtcattaacatcatacgcaacaagaa |
22049782 |
T |
|
| Q |
219 |
cactcagatgcaaatttgtctcaacagaagtct |
251 |
Q |
| |
|
|| ||||||||||||| ||||||||||| |||| |
|
|
| T |
22049783 |
caatcagatgcaaattcgtctcaacagatgtct |
22049815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 22145042 - 22144698
Alignment:
| Q |
20 |
ctatgcccacccgaacaattctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatac |
118 |
Q |
| |
|
|||||||||| |||| ||||||| || |||||||||| |||| | |||||| || || ||| ||||| |||||||| ||||| ||||||| | ||| |
|
|
| T |
22145042 |
ctatgcccacaagaacgattctcactcgcaaacatgaaccaatatcgtagagagtgggaataccgcatggaagagtctgcacgtcttaggcaatctttac |
22144943 |
T |
|
| Q |
119 |
gttaacatggccatagaagacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaa |
218 |
Q |
| |
|
|| |||| ||||| |||||||| |||||||||||||||||| || |||||| |||||||||||||||| |||| | | |||| |||||||| || |||| |
|
|
| T |
22144942 |
gtcaacaaggccaaagaagaccaaaacaacgttcatcagaaatcacaagagacagtgatgagtcgctcgaactggccattaacatcatacgcaacgagaa |
22144843 |
T |
|
| Q |
219 |
cactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaattta |
317 |
Q |
| |
|
|| ||||||||||||| ||||||||| | |||| ||||||| | |||||||| || ||||||||||||||||||| |||| |||| ||||||| ||||| |
|
|
| T |
22144842 |
caatcagatgcaaattcgtctcaacaaatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactggacagatggtgattta |
22144743 |
T |
|
| Q |
318 |
tccgataagtaataatttatatttatggatctcaatgttatgact |
362 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
22144742 |
tccgatgagtaataatttatatttatggttcgcaatgttatgact |
22144698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 12212859 - 12212515
Alignment:
| Q |
20 |
ctatgcccacccgaacaattctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatac |
118 |
Q |
| |
|
|||||||||| |||| ||||||| || |||||||||| |||| | ||||||||| || ||| ||||| |||||||| ||||| |||| || | ||| |
|
|
| T |
12212859 |
ctatgcccacaagaacgattctcactcgcaaacatgaaccaatatcgtagagaatgggaataccgcatggaagagtctgcacgtcttaggaaatctttac |
12212760 |
T |
|
| Q |
119 |
gttaacatggccatagaagacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaa |
218 |
Q |
| |
|
| |||| ||||| || ||||| |||||| ||||||||||| || |||||| | || ||||||||||| |||| | | ||||||||||||| || |||| |
|
|
| T |
12212759 |
ctcaacaaggccaaagtagaccaaaacaatgttcatcagaaatcacaagagacggtaatgagtcgctcgaactggccattaatatcatacgcaacgagaa |
12212660 |
T |
|
| Q |
219 |
cactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaattta |
317 |
Q |
| |
|
|| ||||||||||||| ||||||||||| |||| ||||||| | |||||||| || ||||||||||||||||||| |||| | || ||||| | ||||| |
|
|
| T |
12212659 |
caatcagatgcaaattcgtctcaacagatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactagacagatgatgattta |
12212560 |
T |
|
| Q |
318 |
tccgataagtaataatttatatttatggatctcaatgttatgact |
362 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12212559 |
tccgatgagtaataatttatatttatggttctcaatgttatgact |
12212515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 13814733 - 13815076
Alignment:
| Q |
20 |
ctatgcccacccgaacaattctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatac |
118 |
Q |
| |
|
|||||||||| |||| ||||||| || |||||||||| |||| | ||||||||| || ||| |||| |||||||| ||||| ||||||| | ||| |
|
|
| T |
13814733 |
ctatgcccacaagaacgattctcactcgcaaacatgaaccaatatcgtagagaatgggaataccacatggaagagtctgcacgtcttaggcaatctttac |
13814832 |
T |
|
| Q |
119 |
gttaacatggccatagaagacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaa |
218 |
Q |
| |
|
|| |||| ||||| |||||||| ||||||||||||| | || || |||||| |||| ||||||||||| |||| | | ||| |||||||| || |||| |
|
|
| T |
13814833 |
gtcaacaaggccaaagaagaccaaaacaacgttcataaaaa-tcacaagagacagtaatgagtcgctcgaactggccactaacatcatacgcaacgagaa |
13814931 |
T |
|
| Q |
219 |
cactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaattta |
317 |
Q |
| |
|
|| ||||||||||||| ||||||||||| |||| ||||||| | |||||||| || ||||||||||||||||||| |||| |||| ||||||| ||||| |
|
|
| T |
13814932 |
caatcagatgcaaattcgtctcaacagatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactggatagatggtgattta |
13815031 |
T |
|
| Q |
318 |
tccgataagtaataatttatatttatggatctcaatgttatgact |
362 |
Q |
| |
|
|| ||| |||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
13815032 |
tctgatgagtaataatttatacttatggttctcagtgttatgact |
13815076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 44359968 - 44360200
Alignment:
| Q |
20 |
ctatgcccacccgaacaattctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatac |
118 |
Q |
| |
|
|||||||||| |||| ||||||| || |||||||||| |||| | ||||||||| || ||| ||||| |||||||| ||||| | ||||| | ||| |
|
|
| T |
44359968 |
ctatgcccacaagaacgattctcattcgcaaacatgaaccaatatcgtagagaatgggaataccgcatggaagagtctgcacgtcttgggcaatctttac |
44360067 |
T |
|
| Q |
119 |
gttaacatggccatagaagacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaa |
218 |
Q |
| |
|
| |||| ||||| |||| ||| |||||||||||||||||| || ||||||||||| |||| |||||| |||| ||| |||| |||||||| ||||||| |
|
|
| T |
44360068 |
gccaacaaggccaaagaaaaccaaaacaacgttcatcagaaatcacaagaggcagtaatgaatcgctcgaactggtcattaacatcatacgcaacaagaa |
44360167 |
T |
|
| Q |
219 |
cactcagatgcaaatttgtctcaacagaagtct |
251 |
Q |
| |
|
|| ||||||||||||| ||||||||||| |||| |
|
|
| T |
44360168 |
caatcagatgcaaattcgtctcaacagatgtct |
44360200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 15850956 - 15851109
Alignment:
| Q |
92 |
agtctagacgtcctaggcaaattatacgttaacatggccatagaagacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaact |
191 |
Q |
| |
|
|||||| ||||| |||| ||| | ||||| |||| ||||| |||||||| ||||||||||||| |||||| |||| || |||| ||||||||||| |||| |
|
|
| T |
15850956 |
agtctacacgtcttaggaaaactttacgtcaacaaggccaaagaagaccaaaacaacgttcataagaagttccaaaagacagtaatgagtcgctcgaact |
15851055 |
T |
|
| Q |
192 |
agtcgttaatatcatacgtgacaagaacactcagatgcaaatttgtctcaacag |
245 |
Q |
| |
|
| |||| ||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
15851056 |
caccattaacatcatacacaacaagaacaatcagatgcaaatttgtctcaacag |
15851109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University