View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18812_high_5 (Length: 387)

Name: NF18812_high_5
Description: NF18812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18812_high_5
NF18812_high_5
[»] chr6 (3 HSPs)
chr6 (9-356)||(24892791-24893138)
chr6 (11-356)||(24989619-24989964)
chr6 (193-287)||(32724603-32724697)
[»] chr3 (2 HSPs)
chr3 (16-356)||(23425349-23425689)
chr3 (81-221)||(38646206-38646346)
[»] chr7 (1 HSPs)
chr7 (9-356)||(23206821-23207168)
[»] chr1 (5 HSPs)
chr1 (82-356)||(10102714-10102980)
chr1 (136-349)||(43299191-43299404)
chr1 (81-296)||(50452806-50453021)
chr1 (97-276)||(5192193-5192372)
chr1 (81-221)||(32891398-32891538)
[»] chr2 (1 HSPs)
chr2 (136-278)||(575343-575485)
[»] chr4 (1 HSPs)
chr4 (81-296)||(3882626-3882841)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 24892791 - 24893138
Alignment:
Q  9 gacatcatcaacggttggattgacggtagctcgatagttgttaacgacttcagctattgagtgaggaagggcggtgtagagtgattcggtgtgttggcca 108  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24892791 gacatcttcaacggttggattgaaggtagctcgatagttattaacggcttcagctattgagtgaggaagggcggtgtagagtgattcggtgtgttgacca 24892890  T
Q  109 ttggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaacc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24892891 ttggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaacc 24892990  T
Q  209 aaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtgaattgctgccgga 308  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||    
T  24892991 aaaacgaggaggaaccggagcccggcctccaagaataaccttgtttgagaatgtcttttgcacgaatgatagctgtccatgaaggtgaattgttgccgga 24893090  T
Q  309 agctttcgcttgaaggacgttaggtcctgttgtatatttagcagaaag 356  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||    
T  24893091 agctttcgcttgaaagacgttaggccctgttgtatatttagcagaaag 24893138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 24989619 - 24989964
Alignment:
Q  11 catcatcaacggttggattgacggtagctcgatagttgttaacgacttcagctattgagtgaggaagggcggtgtagagtgattcggtgtgttggccatt 110  Q
    ||||||||||||||| ||||| | ||||| |||||||||| ||    ||| ||||||| || |||||||  |||||||| |||| |||||| || | |||    
T  24989619 catcatcaacggttgaattgaagctagcttgatagttgtttacagtatcaactattgattgtggaagggaagtgtagagggattgggtgtggtgactatt 24989718  T
Q  111 ggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaa 210  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||||||  || | | | || |||||||| |||||| | ||||||||||| ||||||    
T  24989719 ggagcttatgacatccttaaccgttaggtgaatgacatgaatatcaataaccggaatcaaagacccaaggagtccatggtggcaccaattgctgaaccaa 24989818  T
Q  211 aacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtgaattgctgccggaag 310  Q
    || ||||| ||||| ||||| |||| ||||| |||||||||||||||||| || || ||||||||||| |||||||| ||||||||| || | |||||||    
T  24989819 aaggaggatgaacccgagcctggccgccaagcataaccatttttgagaatatccttagcacgaatgatagctgcccaagaaggtgaactgttaccggaag 24989918  T
Q  311 ctttcgcttgaaggacgttaggtcctgttgtatatttagcagaaag 356  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||||    
T  24989919 ctttcgcttgaaggacattaggccctgttgaatatttagcagaaag 24989964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 32724603 - 32724697
Alignment:
Q  193 caccaattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgccca 287  Q
    ||||||||||| ||| |||| ||||| ||||| ||||| |  | ||||||||| |||||||||||||||||||| ||||||||||| | ||||||    
T  32724603 caccaattgctgaacaaaaaggaggatgaacccgagccggcgcgccaagaatacccatttttgagaatgtctttggcacgaatgatagatgccca 32724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 23425689 - 23425349
Alignment:
Q  16 tcaacggttggattgacggtagctcgatagttgttaacgacttcagctattgagtgaggaagggcggtgtagagtgattcggtgtgttggccattggagc 115  Q
    ||||| |||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  23425689 tcaaccgttggattgaaggtagctcgataattgttaacggcatcagctattgagtgaggaagggcagtgtagagagattcggtgtgttggccattggagc 23425590  T
Q  116 ttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  23425589 ttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaagaaccaaggagaccatggggacaccaattgcttaaccaaaacga 23425490  T
Q  216 ggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtgaattgctgccggaagctttc 315  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  23425489 ggaggaaccggagcccggcctccaagaatagccatttttgaaaatgtcttttgcacgaatgatagctgcccatgaaggtgaattgttgccggaagctttc 23425390  T
Q  316 gcttgaaggacgttaggtcctgttgtatatttagcagaaag 356  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  23425389 gcttgaaggacgttaggccctgttgtatatttagcagaaag 23425349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 221
Target Start/End: Original strand, 38646206 - 38646346
Alignment:
Q  81 ggtgtagagtgattcggtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaagg 180  Q
    ||||||||| | ||| |||||||| ||| || |  ||| |||||| ||||| || ||||||  ||| ||||| |||||||| |||||  | ||||||||     
T  38646206 ggtgtagagggcttcagtgtgttgtccagtgaaagttaacacatctttaactgtgaggtgagcgtcgtgaatgtcaataatagggactaaagaaccaaga 38646305  T
Q  181 agaccatggggacaccaattgctaaaccaaaacgaggagga 221  Q
       ||||| | |||||||||||| |||||||| ||||||||    
T  38646306 tacccatgagaacaccaattgctgaaccaaaaggaggagga 38646346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 23206821 - 23207168
Alignment:
Q  9 gacatcatcaacggttggattgacggtagctcgatagttgttaacgacttcagctattgagtgaggaagggcggtgtagagtgattcggtgtgttggcca 108  Q
    |||||| || ||||||||||||| |||||||| |||| |||| |||   ||||||||||| ||||||||||||||||| || | || |||||||||||||    
T  23206821 gacatcttcgacggttggattgaaggtagctctataggtgttgacggtgtcagctattgattgaggaagggcggtgtatagagcttgggtgtgttggcca 23206920  T
Q  109 ttggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaacc 208  Q
    || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||||| ||||    
T  23206921 tttgagcttatcacatcttttaccgtaaggtgaatgtcatgaatatcaataatggggaccaaagaaccaaggagaccatggggatgccaattgctgaacc 23207020  T
Q  209 aaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtgaattgctgccgga 308  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| || |||||||    
T  23207021 aaaaagaggaggaaccggagcccggcctccaagaataaccatttttgaaaatgtcttttgcacgaatgatagctgcccaggaaggtgaactgttgccgga 23207120  T
Q  309 agctttcgcttgaaggacgttaggtcctgttgtatatttagcagaaag 356  Q
    | | |||||||||||||||||||| |||||||||||||||||||||||    
T  23207121 aaccttcgcttgaaggacgttaggccctgttgtatatttagcagaaag 23207168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 356
Target Start/End: Original strand, 10102714 - 10102980
Alignment:
Q  82 gtgtagagtgattcggtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaagga 181  Q
    |||||||| |||| |||||||||||||||| ||||||||||||   ||||||| ||||| || ||||| || |||||||      |||  ||||||||||    
T  10102714 gtgtagagggattgggtgtgttggccattgaagcttatcacatatctaaccgttaggtggatatcatggatgtcaataa------ccg--gaaccaagga 10102805  T
Q  182 gaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattgc 281  Q
    | |||||||||||||||||| | |||||||| |||||  |||| ||||| |  | |||| ||||||||||||||| ||| ||||| ||||||||||| |     
T  10102806 ggccatggggacaccaattgttgaaccaaaaggaggattaacccgagcctgcgcgccaataataaccatttttgaaaatatctttggcacgaatgataga 10102905  T
Q  282 tgcccatgaaggtgaattgctgccggaagctttcgcttgaaggacgttaggtcctgttgtatatttagcagaaag 356  Q
    |||||| || ||||| ||||| |  ||||||||||| |||| ||| || || |||| || |||||| ||||||||    
T  10102906 tgcccaagagggtgagttgcttcttgaagctttcgcatgaaagacatttggccctgctgaatattttgcagaaag 10102980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 136 - 349
Target Start/End: Complemental strand, 43299404 - 43299191
Alignment:
Q  136 aggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcc 235  Q
    |||||||||||||| ||||||||||| || ||| | |||||||| | ||| || || ||||||||||| |||||||| ||||||||||| ||||| |  |    
T  43299404 aggtgaatgtcatggatatcaataataggaaccaaagaaccaagaaaaccttgagggcaccaattgctgaaccaaaaggaggaggaacccgagccggcgc 43299305  T
Q  236 tccaagaataaccatttttgagaatgtcttttgcacgaatgattgctgcccatgaaggtgaattgctgccggaagctttcgcttgaaggacgttaggtcc 335  Q
     ||||||||| |||||||||||||| ||||| ||||||||||| | |||||| || || ||  |||||  ||  || || |||||||||| |||||  ||    
T  43299304 gccaagaatacccatttttgagaatttctttggcacgaatgatagatgcccaagagggagagctgctgttggtggcatttgcttgaaggatgttagaacc 43299205  T
Q  336 tgttgtatatttag 349  Q
    || |||||||||||    
T  43299204 tgctgtatatttag 43299191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 296
Target Start/End: Complemental strand, 50453021 - 50452806
Alignment:
Q  81 ggtgtagagtgattcggtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaagg 180  Q
    ||||||||| ||||  ||| |||| || ||| || ||||||||||  ||||||| || || |  ||||||||||||||||  |||||  | |||||||||    
T  50453021 ggtgtagagggattgcgtgcgttgtccgttgaagtttatcacatctctaaccgtgagctggacatcatgaatatcaataacagggactaaagaaccaagg 50452922  T
Q  181 agaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattg 280  Q
     | |||||| |||||||||| ||||||||||| ||||| ||||| || || ||||||||||| ||||||  |||||  || ||||| ||||| ||||| |    
T  50452921 ggcccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagtaaccaagtttgaagatatctttggcacggatgatag 50452822  T
Q  281 ctgcccatgaaggtga 296  Q
     || ||| ||||||||    
T  50452821 atgaccaagaaggtga 50452806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 276
Target Start/End: Original strand, 5192193 - 5192372
Alignment:
Q  97 gtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacacc 196  Q
    ||||||| ||||||| |  |||||||||| || || || || ||||||||||| || |||||||| || ||| | || ||||| | |||  | |  ||||    
T  5192193 gtgtgttagccattgaaagttatcacatctttgacggtgagatgaatgtcatggatgtcaataataggaaccaaagagccaagtaaacctcgagagcacc 5192292  T
Q  197 aattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatg 276  Q
    ||||||| |||||||| ||||||||| | || || |  | ||||| ||| |||||||||||||||||||| |||||||||    
T  5192293 aattgctgaaccaaaaggaggaggaatccgatccggcgcgccaagcatacccatttttgagaatgtctttggcacgaatg 5192372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 32891538 - 32891398
Alignment:
Q  81 ggtgtagagtgattcggtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaagg 180  Q
    ||||||||| | ||| |||||||| ||| || |  ||| |||||| ||||| || ||||||  ||| ||||| |||||||| |||||  | ||||||||     
T  32891538 ggtgtagagggcttcagtgtgttgtccagtgaaagttaacacatctttaactgtgaggtgagcgtcgtgaatgtcaataatagggactaaagaaccaaga 32891439  T
Q  181 agaccatggggacaccaattgctaaaccaaaacgaggagga 221  Q
       ||||| | |||||||||||| |||||||| ||||||||    
T  32891438 tacccatgagaacaccaattgctgaaccaaaaggaggagga 32891398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 575485 - 575343
Alignment:
Q  136 aggtgaatgtcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcc 235  Q
    |||||||| |||||||| || ||||| || ||| ||||||| || | ||||||| | ||||||||| | |||||||| ||||||||||| || || || |    
T  575485 aggtgaatatcatgaatgtctataataggaaccaaggaaccgagaaaaccatggtggcaccaattgttgaaccaaaaggaggaggaacctgaacctggtc 575386  T
Q  236 tccaagaataaccatttttgagaatgtcttttgcacgaatgat 278  Q
     |||||||||||||||||||||||| ||||| ||||| |||||    
T  575385 gccaagaataaccatttttgagaatatctttagcacgtatgat 575343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 296
Target Start/End: Complemental strand, 3882841 - 3882626
Alignment:
Q  81 ggtgtagagtgattcggtgtgttggccattggagcttatcacatccttaaccgtaaggtgaatgtcatgaatatcaataatggggaccgaggaaccaagg 180  Q
    ||||||||| ||||  ||| |||| || ||| || ||||||||||  ||||||| || || |  ||||||||||||||||  |||||  | || ||||||    
T  3882841 ggtgtagagggattgcgtgcgttgtccgttgaagtttatcacatctctaaccgtgagctggacatcatgaatatcaataacagggactaaagagccaagg 3882742  T
Q  181 agaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaataaccatttttgagaatgtcttttgcacgaatgattg 280  Q
     | |||||| |||||||||| ||||||||||| ||||| ||||| || || ||||||||||| |||||   |||||  || ||||| ||||| |||||||    
T  3882741 gggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagtaacctagtttgaatatatctttggcacggatgattg 3882642  T
Q  281 ctgcccatgaaggtga 296  Q
     || ||| ||||||||    
T  3882641 atgaccaagaaggtga 3882626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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