View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18812_low_2 (Length: 438)
Name: NF18812_low_2
Description: NF18812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18812_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 86 - 431
Target Start/End: Original strand, 8071386 - 8071731
Alignment:
| Q |
86 |
aattgcgtgagtttttaggggtaaaatgtaaatgggctgataaaggaggttgtatgctttcgtaaaggggcccatagaaagatccaaaaattctgagggt |
185 |
Q |
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| T |
8071386 |
aattgcctgagtttttaggaggtaaatgtaaatgcgctgatgaaggaggatgtatgcgttcggataagggcccatggaaagatcctgaaattctgagggt |
8071485 |
T |
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| Q |
186 |
ttgccctgccactgttctcttttacctctattctcttcttgcatctctatttttaatttcagctaataactttatgtcgcgtgtatgtaattgcagttgg |
285 |
Q |
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| T |
8071486 |
tggacctgccactgttctcttttacctctattctcttcttgcatctctatttttaatttcagctaataactttatgtcgcgtgtatgtaattgcagttgg |
8071585 |
T |
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| Q |
286 |
ttgagaatggggctcacaaatgttcnnnnnnntctgagtctaatgttgacgaagagaaaacagcttctgaggtaagaaagctcattctagcaagtgttag |
385 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8071586 |
ttgagaatggggctcacaaatgttcaaaaaaatctgagtctaacgttgacgaagagaaaacagcttctgaggtaagaaagctcattctagcaagtgttag |
8071685 |
T |
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| Q |
386 |
tgnnnnnnnggcatctgtgaacttcttaactgattgatgatgatgt |
431 |
Q |
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| T |
8071686 |
tgtttttttggcatctgtgaacttcttaactgattgatgaggatgt |
8071731 |
T |
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