View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18812_low_7 (Length: 253)
Name: NF18812_low_7
Description: NF18812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18812_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 9430515 - 9430339
Alignment:
| Q |
1 |
cgagatctgtgactcatttgaagcattttgttttgtgctaaaattaatatccaactaaaaggtatctttgattagtaagtggcatgttactataccaatt |
100 |
Q |
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| T |
9430515 |
cgagatctgtgactcatttgaagcattttgttttgtgctaaaattaatatccaactaaaaggtatctttgattaataattggcatgttactataccaatt |
9430416 |
T |
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| Q |
101 |
cgtacaatgtcttagttcaaccataaagataacattcaaaatatgtataaagcaattataagtccattgtcaaaaaa |
177 |
Q |
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| T |
9430415 |
cgtacaatgtcttagttcaaccataaagataacattcaaaatatgtataaagcaattataagtccattgtcaaaaaa |
9430339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 9411165 - 9410991
Alignment:
| Q |
1 |
cgagatctgtgactcatttgaagcattttgttttgtgctaaaattaatatccaactaaaaggtatctttgattagtaagtggcatgttactataccaatt |
100 |
Q |
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| T |
9411165 |
cgagatctgcgactcatctgaagcattttgttctgtgctgaaattaataaataactaaaaggtagctttgattaagaagtggcatgttactatact--tt |
9411068 |
T |
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| Q |
101 |
cgtacaatgtcttagttcaaccataaagataacattcaaaatatgtataaagcaattataagtccattgtcaaaaaa |
177 |
Q |
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| T |
9411067 |
ggtacaatgtcttagttcaaccataaagataacattcaaaatatgtatatagcaattagaaagccattgtcaaaaaa |
9410991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 9437358 - 9437115
Alignment:
| Q |
2 |
gagatctgtgactcatttgaagcattttgttttgtgctaaaattaata-tccaactaaaaggtatctttgattagtaagtggcatgttactataccaatt |
100 |
Q |
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| T |
9437358 |
gagatctgtgactcatctgaagcattttgttttgtgctaaaattaaaaatctaactaaaaggtagctttgattaataagtggcatgttactatat---tt |
9437262 |
T |
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| Q |
101 |
cgtacaatgtcttagttcaaccataaagataacattcaaaatatgtataaa-------gcaattataagtccattgtcaaaaaaggaatcatagaattga |
193 |
Q |
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| T |
9437261 |
tgtacaatgtcttagttcaaccataaagataagattcaaaatatttataaactataacacaataagaaagctactgtcaaaaaaggaatcatagaattgt |
9437162 |
T |
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| Q |
194 |
atgatactgattttctgacaattttggatcaaatatttatttatagtat |
242 |
Q |
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| T |
9437161 |
atgatattg--cttgtgacagatttggatcaaatatttaatgatagtat |
9437115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 243
Target Start/End: Complemental strand, 9419755 - 9419567
Alignment:
| Q |
53 |
aactaaaaggtatctttgattagtaagtggcatgttactataccaattcgtacaatgtcttagttcaaccataaagataacattcaaaatatgtataaag |
152 |
Q |
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| T |
9419755 |
aactaaaaggtggctttgatcaataagtggcatgtaactattc---tttggacattgtcttagttcatccaaaaagataacattcaaaacatgtataaag |
9419659 |
T |
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| Q |
153 |
caattataagtccattgtcaaaaa-aggaatcatagaattgaatgatactgattttctgacaattttggatcaaatatttatttatagtata |
243 |
Q |
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| T |
9419658 |
caattatgaagccattgtaaaaaataggaatcatagaattgtatgatactgattttgtgacagatttggatcaaatttttaatgatagtata |
9419567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 151
Target Start/End: Complemental strand, 9440525 - 9440411
Alignment:
| Q |
34 |
tgtgctaaaattaatatccaactaaaaggtatctttgattagtaagtggcatgttactataccaattcgtacaatgtcttagttcaaccataaagataac |
133 |
Q |
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| T |
9440525 |
tgtgctgaagttaataactaactaaaaggtagctttgattaataagtgtcatgttactatac--ttttgtacaatgtcttagttcaacc-taacgataac |
9440429 |
T |
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| Q |
134 |
attcaaaatatgtataaa |
151 |
Q |
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| T |
9440428 |
attcagaatatgtataaa |
9440411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 5793982 - 5794044
Alignment:
| Q |
12 |
actcatttgaagcattttgttttgtgctaaaattaatatccaactaaaaggtatctttgatta |
74 |
Q |
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| T |
5793982 |
actcatctaaagcaatttgttttgtgataaaattaataaccaactaaaaggtaactttaatta |
5794044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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