View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18813_high_5 (Length: 309)

Name: NF18813_high_5
Description: NF18813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18813_high_5
NF18813_high_5
[»] chr7 (14 HSPs)
chr7 (85-244)||(17272705-17272864)
chr7 (90-221)||(29681776-29681906)
chr7 (85-158)||(7211866-7211939)
chr7 (95-188)||(7211947-7212040)
chr7 (106-246)||(43500011-43500148)
chr7 (96-159)||(25099327-25099390)
chr7 (85-161)||(46282874-46282951)
chr7 (85-133)||(32315713-32315761)
chr7 (96-146)||(32315790-32315840)
chr7 (85-158)||(4911698-4911771)
chr7 (106-146)||(6980948-6980988)
chr7 (106-146)||(42494799-42494839)
chr7 (82-136)||(29407496-29407550)
chr7 (78-115)||(29681903-29681940)
[»] chr3 (23 HSPs)
chr3 (85-246)||(11512393-11512554)
chr3 (85-246)||(22893891-22894051)
chr3 (95-212)||(31342023-31342140)
chr3 (111-212)||(20286936-20287037)
chr3 (97-159)||(36738279-36738341)
chr3 (103-143)||(17546997-17547037)
chr3 (77-133)||(48342785-48342841)
chr3 (85-136)||(29081700-29081751)
chr3 (181-237)||(29081598-29081655)
chr3 (79-136)||(32385358-32385415)
chr3 (106-159)||(32385436-32385489)
chr3 (97-133)||(48342320-48342356)
chr3 (105-148)||(29081625-29081668)
chr3 (117-147)||(16205747-16205777)
chr3 (98-160)||(20496553-20496614)
chr3 (77-115)||(22893890-22893928)
chr3 (78-136)||(31342108-31342165)
chr3 (202-247)||(25790897-25790942)
chr3 (202-239)||(49159502-49159539)
chr3 (82-114)||(5633181-5633213)
chr3 (210-242)||(5633181-5633213)
chr3 (75-115)||(11512517-11512557)
chr3 (76-136)||(36738362-36738422)
[»] chr1 (25 HSPs)
chr1 (84-247)||(50754729-50754892)
chr1 (85-246)||(28739304-28739465)
chr1 (103-246)||(9379842-9379985)
chr1 (85-246)||(28045325-28045486)
chr1 (103-246)||(9884865-9885008)
chr1 (103-203)||(6539593-6539693)
chr1 (111-213)||(15928097-15928200)
chr1 (174-246)||(44381908-44381981)
chr1 (77-136)||(10449446-10449505)
chr1 (179-246)||(35251165-35251234)
chr1 (179-242)||(49200058-49200122)
chr1 (106-246)||(10449447-10449579)
chr1 (92-136)||(28810061-28810105)
chr1 (78-133)||(44801751-44801806)
chr1 (78-136)||(44938794-44938852)
chr1 (103-140)||(4579192-4579229)
chr1 (77-115)||(28045449-28045487)
chr1 (77-115)||(28739303-28739341)
chr1 (77-115)||(44381907-44381945)
chr1 (117-159)||(44938872-44938914)
chr1 (111-148)||(719023-719060)
chr1 (202-239)||(6539683-6539720)
chr1 (120-161)||(49199994-49200035)
chr1 (78-115)||(50754854-50754891)
chr1 (78-130)||(593824-593876)
[»] chr2 (13 HSPs)
chr2 (103-246)||(39819087-39819230)
chr2 (103-246)||(12918557-12918700)
chr2 (87-246)||(15562212-15562371)
chr2 (85-212)||(7755342-7755469)
chr2 (18-77)||(8921498-8921557)
chr2 (85-234)||(13421692-13421841)
chr2 (79-159)||(34563326-34563406)
chr2 (250-290)||(8921552-8921592)
chr2 (106-146)||(18182591-18182631)
chr2 (188-239)||(39819060-39819112)
chr2 (202-246)||(12918498-12918543)
chr2 (78-115)||(12918663-12918700)
chr2 (78-115)||(39819193-39819230)
[»] chr6 (12 HSPs)
chr6 (85-246)||(2543735-2543895)
chr6 (85-246)||(11448063-11448224)
chr6 (78-158)||(369498-369578)
chr6 (78-136)||(16193830-16193888)
chr6 (106-246)||(16193757-16193888)
chr6 (78-135)||(28581731-28581788)
chr6 (90-146)||(2980786-2980842)
chr6 (95-156)||(35049754-35049816)
chr6 (78-115)||(11448187-11448224)
chr6 (77-115)||(2543734-2543772)
chr6 (106-159)||(28581810-28581863)
chr6 (105-161)||(1879187-1879243)
[»] chr4 (22 HSPs)
chr4 (103-246)||(31846782-31846925)
chr4 (105-212)||(6607420-6607527)
chr4 (104-246)||(31012152-31012294)
chr4 (105-230)||(6608375-6608500)
chr4 (169-245)||(2254622-2254698)
chr4 (95-155)||(54223569-54223629)
chr4 (85-159)||(11392307-11392379)
chr4 (173-239)||(46321429-46321496)
chr4 (78-136)||(36273058-36273116)
chr4 (95-145)||(38324924-38324974)
chr4 (95-156)||(41306689-41306750)
chr4 (103-160)||(43063542-43063599)
chr4 (88-136)||(30023646-30023694)
chr4 (179-244)||(32008336-32008402)
chr4 (82-136)||(33380606-33380660)
chr4 (82-132)||(53261093-53261143)
chr4 (105-146)||(9712943-9712984)
chr4 (106-146)||(22435379-22435419)
chr4 (190-244)||(15031965-15032020)
chr4 (188-239)||(31846900-31846952)
chr4 (85-133)||(40789263-40789311)
chr4 (188-239)||(54613030-54613082)
[»] chr5 (20 HSPs)
chr5 (85-246)||(5215560-5215722)
chr5 (85-219)||(9177863-9177997)
chr5 (103-219)||(29385303-29385419)
chr5 (103-230)||(19417469-19417595)
chr5 (111-247)||(36568736-36568872)
chr5 (111-161)||(1840003-1840053)
chr5 (87-159)||(23219360-23219432)
chr5 (78-160)||(896268-896350)
chr5 (95-218)||(25879328-25879447)
chr5 (95-148)||(42772054-42772107)
chr5 (98-161)||(31848177-31848239)
chr5 (180-240)||(7137637-7137698)
chr5 (103-159)||(7137665-7137721)
chr5 (78-122)||(41287997-41288041)
chr5 (77-132)||(12605660-12605715)
chr5 (188-239)||(29385394-29385446)
chr5 (108-147)||(5998620-5998659)
chr5 (111-141)||(37325634-37325664)
chr5 (209-247)||(41288004-41288042)
chr5 (202-239)||(19417442-19417479)
[»] chr8 (11 HSPs)
chr8 (105-246)||(43465112-43465256)
chr8 (106-247)||(31470771-31470914)
chr8 (174-246)||(16687512-16687585)
chr8 (202-246)||(1605038-1605082)
chr8 (78-135)||(4531845-4531902)
chr8 (106-210)||(7931550-7931655)
chr8 (77-115)||(16687511-16687549)
chr8 (106-156)||(33763539-33763589)
chr8 (103-136)||(31470845-31470878)
chr8 (95-132)||(45051343-45051380)
chr8 (82-126)||(33763461-33763505)
[»] scaffold0343 (2 HSPs)
scaffold0343 (202-247)||(12225-12270)
scaffold0343 (106-159)||(12285-12338)
[»] scaffold1315 (1 HSPs)
scaffold1315 (85-136)||(1819-1870)
[»] scaffold1293 (1 HSPs)
scaffold1293 (85-136)||(201-252)
[»] scaffold0001 (1 HSPs)
scaffold0001 (103-161)||(507740-507798)
[»] scaffold0110 (1 HSPs)
scaffold0110 (79-136)||(26500-26557)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 85 - 244
Target Start/End: Original strand, 17272705 - 17272864
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 184  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||    
T  17272705 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacactt 17272804  T
Q  185 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattat 244  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  17272805 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 17272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 29681776 - 29681906
Alignment:
Q  90 ggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaac 189  Q
    |||| ||||||||||||||| ||||||||||||||| |||||| |||||||| || ||||| ||| ||||||       |||||||| ||||||||||||    
T  29681776 ggtgacattgtggttggtgacattggccaaccacaacgtcacatgtggctttttttttttttttt-acaagatatttttgttgttttacacacttgtaac 29681874  T
Q  190 attgtggttggtaatgtcaccaatatcaccaa 221  Q
    |||||||||||||||||||||||| |||||||    
T  29681875 attgtggttggtaatgtcaccaatgtcaccaa 29681906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 7211866 - 7211939
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 158  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  7211866 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 188
Target Start/End: Complemental strand, 7212040 - 7211947
Alignment:
Q  95 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaa 188  Q
    ||||||||| || || |||||||||||||||||||||| ||| ||||||||||||||||||||||||       ||||||||||||||||||||    
T  7212040 cattgtggtgggagacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttttgttgttttgcacacttgtaa 7211947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 43500011 - 43500148
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 205  Q
    |||||||||| ||| ||||||||||||  || | ||||||||||||||||||||         ||||||||| ||  |||||||||||||||||||||||    
T  43500011 gtgatattggtcaatcacaatgtcacatatgacattcttctttttctttcacaa--tttttttgttgttttgtact-ttgtaacattgtggttggtaatg 43500107  T
Q  206 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    ||||||||||||||||| ||||| || ||||| ||||||||    
T  43500108 tcaccaatatcaccaaccacaatatcgcccaaatattatcc 43500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 25099390 - 25099327
Alignment:
Q  96 attgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 159  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  25099390 attgtggttggtgactttggtcaaccacaatgtcacaagtgtctttcttctttttctttcacaa 25099327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 46282874 - 46282951
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtgg-ctttcttctttttctttcacaaga 161  Q
    ||||| ||| |||||| |||||||| |||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  46282874 acttgagtgacattgtagttggtgacattggccaaccacaatatcacaagtggtttttcttctttctctttcacaaga 46282951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 32315713 - 32315761
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 133  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  32315713 acttgcgtgacattgtggttggtgacattggccaaccacaatgtcacaa 32315761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 32315840 - 32315790
Alignment:
Q  96 attgtggttggtgatattggccaaccacaatgtcacaagtggctttcttct 146  Q
    |||||||||||||| ||||| |||| ||||||||| |||||||||||||||    
T  32315840 attgtggttggtgacattggtcaactacaatgtcagaagtggctttcttct 32315790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 4911771 - 4911698
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 158  Q
    ||||||||| ||||||| | ||||||||||| |||| | ||||||||| |||  |||||||||| |||||||||    
T  4911771 acttgggtgacattgtgatcggtgatattggtcaactataatgtcacaggtgaatttcttctttctctttcaca 4911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 6980988 - 6980948
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttct 146  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  6980988 gtgacattggccaaccacaatgttacaagtggctttcttct 6980948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 42494799 - 42494839
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttct 146  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  42494799 gtgacattggcaaaccacaatgtcacaagtggctttcttct 42494839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 29407496 - 29407550
Alignment:
Q  82 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    ||||||||||||  ||||| || |||||||||||||||| ||||||||| |||||    
T  29407496 aatacttgggtgatattgtcgtcggtgatattggccaactacaatgtcataagtg 29407550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 29681940 - 29681903
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattgg 115  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  29681940 ggataatacttgggtgacattgtggttggtgacattgg 29681903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 11512393 - 11512554
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 184  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       | ||||||||||||||    
T  11512393 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgatgttttgcacactt 11512492  T
Q  185 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  11512493 gtaacattgtggttggtaatgtcaccaatgtcaccaaccataatgtcacccaagtattatcc 11512554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 85 - 246
Target Start/End: Complemental strand, 22894051 - 22893891
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 184  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||       ||||||||| ||||||    
T  22894051 acttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt-gttgttttgtacactt 22893953  T
Q  185 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  22893952 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 22893891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 31342023 - 31342140
Alignment:
Q  95 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgt 194  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  31342023 cattgtggttggtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgt 31342122  T
Q  195 ggttggtaatgtcaccaa 212  Q
    ||||||||||||||||||    
T  31342123 ggttggtaatgtcaccaa 31342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 20286936 - 20287037
Alignment:
Q  111 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcacc 210  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  20286936 attggccaaccacaatgtcacatgtggctttcttctttttcttttacaagacttttttgttgttttgcacacttgtaacattgtggttggtaatgtcacc 20287035  T
Q  211 aa 212  Q
    ||    
T  20287036 aa 20287037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 36738279 - 36738341
Alignment:
Q  97 ttgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 159  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| | ||||||||    
T  36738279 ttgtggttggtgatattggtcaaccacaatatcacaagtgtctttcttctttctttttcacaa 36738341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 17546997 - 17547037
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttct 143  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  17546997 ttggtgatattggccaaccataatgtcacaagtggctttct 17547037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 48342785 - 48342841
Alignment:
Q  77 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 133  Q
    ||||||||||||||||| |||| ||||||| || ||||| |||||||||||||||||    
T  48342785 gggataatacttgggtgacattatggttggcgacattggtcaaccacaatgtcacaa 48342841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 29081751 - 29081700
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    |||||||||  |||||||||||||| ||||| ||||||||||||||||||||    
T  29081751 acttgggtgatattgtggttggtgacattggtcaaccacaatgtcacaagtg 29081700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 29081655 - 29081598
Alignment:
Q  181 acttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaa 237  Q
    |||||| |||||||||||||| ||||||||| || |||||||| ||||||||||||||    
T  29081655 acttgtgacattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaa 29081598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 32385358 - 32385415
Alignment:
Q  79 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    ||||||| ||||||| ||||||| ||||||| ||||| |||||||||||| |||||||    
T  32385358 gataatatttgggtgacattgtgattggtgacattggtcaaccacaatgtgacaagtg 32385415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 32385489 - 32385436
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 159  Q
    ||||||||||||||||||||||| | |||||  |||||||||| ||||||||||    
T  32385489 gtgatattggccaaccacaatgttaaaagtgtttttcttctttctctttcacaa 32385436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 48342356 - 48342320
Alignment:
Q  97 ttgtggttggtgatattggccaaccacaatgtcacaa 133  Q
    ||||||| |||||||||||||||||||||||||||||    
T  48342356 ttgtggtcggtgatattggccaaccacaatgtcacaa 48342320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 29081625 - 29081668
Alignment:
Q  105 ggtgatattggccaaccacaatgtcacaagtggctttcttcttt 148  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||    
T  29081625 ggtgacattgaccaaccacaatgtcacaagtagctttcttcttt 29081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 147
Target Start/End: Original strand, 16205747 - 16205777
Alignment:
Q  117 caaccacaatgtcacaagtggctttcttctt 147  Q
    |||||||||||||||||||||||||||||||    
T  16205747 caaccacaatgtcacaagtggctttcttctt 16205777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 20496614 - 20496553
Alignment:
Q  98 tgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 160  Q
    |||||||||||| |||| | ||||||||||||||| ||| ||||||||| | |||||||||||    
T  20496614 tgtggttggtgacattgtc-aaccacaatgtcacacgtgactttcttctctctctttcacaag 20496553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 22893890 - 22893928
Alignment:
Q  77 gggataatacttgggtggcattgtggttggtgatattgg 115  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  22893890 gggataatacttgggtgacattgtggttggtgacattgg 22893928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 31342165 - 31342108
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    |||||||| ||||||| ||||||||||||||| |||  ||||||||||||| |||||||    
T  31342165 ggataatatttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtg 31342108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 25790897 - 25790942
Alignment:
Q  202 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 247  Q
    |||||||||||| |||||||| | |||||||||||| |||||||||    
T  25790897 aatgtcaccaatgtcaccaaccataatgtcacccaaatattatcca 25790942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 49159502 - 49159539
Alignment:
Q  202 aatgtcaccaatatcaccaacgacaatgtcacccaagt 239  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  49159502 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 49159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 5633213 - 5633181
Alignment:
Q  82 aatacttgggtggcattgtggttggtgatattg 114  Q
    |||||||||||| ||||||||||||||||||||    
T  5633213 aatacttgggtgacattgtggttggtgatattg 5633181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 5633181 - 5633213
Alignment:
Q  210 caatatcaccaacgacaatgtcacccaagtatt 242  Q
    ||||||||||||| |||||||||||||||||||    
T  5633181 caatatcaccaaccacaatgtcacccaagtatt 5633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 11512557 - 11512517
Alignment:
Q  75 aggggataatacttgggtggcattgtggttggtgatattgg 115  Q
    ||||||||||||||||||| |||| |||||||||| |||||    
T  11512557 aggggataatacttgggtgacattatggttggtgacattgg 11512517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 36738422 - 36738362
Alignment:
Q  76 ggggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    ||||| |||| ||||||| ||||||||||||||| ||||| |||| ||||| ||| |||||    
T  36738422 ggggaaaatatttgggtgacattgtggttggtgacattggtcaactacaatatcataagtg 36738362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 84 - 247
Target Start/End: Original strand, 50754729 - 50754892
Alignment:
Q  84 tacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacact 183  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||       |||||||||||||||    
T  50754729 tactttggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttttgttgttttgcacact 50754828  T
Q  184 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 247  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  50754829 tgtaacattgtggttgataatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcca 50754892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 85 - 246
Target Start/End: Complemental strand, 28739465 - 28739304
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 184  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||       ||| ||||||||||||    
T  28739465 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagatttttttgttattttgcacactt 28739366  T
Q  185 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  28739365 gtaacattgtggttggtaatgtcaccaatatcaccaaccacaatatcacccaagtattatcc 28739304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 246
Target Start/End: Original strand, 9379842 - 9379985
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 202  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  9379842 ttggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggta 9379941  T
Q  203 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    |||| |||||| |||||||| |||||||||||||| ||||||||    
T  9379942 atgttaccaatgtcaccaaccacaatgtcacccaaatattatcc 9379985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 28045325 - 28045486
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngtt-gttttgcacact 183  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||        || |||||| |||||    
T  28045325 acttgggtgacattgtggttggtga-attggccaaccataatgtcacaagtggctttcttctttttctttaacaagattttcttttttgttttgtacact 28045423  T
Q  184 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  28045424 tgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 28045486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 103 - 246
Target Start/End: Original strand, 9884865 - 9885008
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 202  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||    
T  9884865 ttggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttgata 9884964  T
Q  203 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    ||||||| ||| |||||||| ||||| |||||||||||| ||||    
T  9884965 atgtcacgaatgtcaccaaccacaatatcacccaagtatcatcc 9885008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 6539693 - 6539593
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 202  Q
    ||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  6539693 ttggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaagacttttttgttgttttgcacacttgtaacattgtggttggta 6539594  T
Q  203 a 203  Q
    |    
T  6539593 a 6539593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 15928200 - 15928097
Alignment:
Q  111 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga-nnnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcac 209  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||| |||||||||    
T  15928200 attggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttgttgttgttttgtacacttgtaacattgtggttgataatgtcac 15928101  T
Q  210 caat 213  Q
    ||||    
T  15928100 caat 15928097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 44381981 - 44381908
Alignment:
Q  174 tttgcacacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  44381981 tttgtacacgtgtaacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaaatattatcc 44381908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 10449446 - 10449505
Alignment:
Q  77 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  10449446 gggataatacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 10449505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 35251234 - 35251165
Alignment:
Q  179 acacttgtaacattgtggttggtaatgtcaccaatatcaccaacgaca--atgtcacccaagtattatcc 246  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |  |||||| |||||||||||||    
T  35251234 acacttgtaacattgtggttggtaatgtcaccaatatcaccaaccatatcatgtcatccaagtattatcc 35251165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 49200058 - 49200122
Alignment:
Q  179 acacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtatt 242  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||    
T  49200058 acacttgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcacctaagtatt 49200122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 10449579 - 10449447
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 205  Q
    |||| ||||| ||||||||||||||||| |  ||||||||||| |||||||||| |       |||  |||| |||||||| ||||||||||||||        
T  10449579 gtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggt---- 10449484  T
Q  206 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
        |||| |||||||| |||||||||||||||||||||||    
T  10449483 ----caatgtcaccaaccacaatgtcacccaagtattatcc 10449447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 28810105 - 28810061
Alignment:
Q  92 tggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  28810105 tggcattgtggttggtgacattggtcaaccacaatgtcacaagtg 28810061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 44801751 - 44801806
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 133  Q
    ||||||||||| ||||  |||||||||| ||| |||||||||||||||||||||||    
T  44801751 ggataatacttaggtgatattgtggttgatgacattggccaaccacaatgtcacaa 44801806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 44938794 - 44938852
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    |||||| ||||||||| |||||||||| |||| |||| ||||||| |||||||||||||    
T  44938794 ggataacacttgggtgacattgtggttagtgacattgaccaaccagaatgtcacaagtg 44938852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 4579192 - 4579229
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctt 140  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4579192 ttggtgacattggccaaccacaatgtcacaagtggctt 4579229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 28045487 - 28045449
Alignment:
Q  77 gggataatacttgggtggcattgtggttggtgatattgg 115  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  28045487 gggataatacttgggtgacattgtggttggtgacattgg 28045449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 28739303 - 28739341
Alignment:
Q  77 gggataatacttgggtggcattgtggttggtgatattgg 115  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  28739303 gggataatacttgggtgatattgtggttggtgatattgg 28739341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 44381907 - 44381945
Alignment:
Q  77 gggataatacttgggtggcattgtggttggtgatattgg 115  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  44381907 gggataatatttgggtgacattgtggttggtgatattgg 44381945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 44938914 - 44938872
Alignment:
Q  117 caaccacaatgtcacaagtggctttcttctttttctttcacaa 159  Q
    |||||||||||  ||||||||||||||||||| ||||||||||    
T  44938914 caaccacaatggtacaagtggctttcttctttctctttcacaa 44938872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 719023 - 719060
Alignment:
Q  111 attggccaaccacaatgtcacaagtggctttcttcttt 148  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  719023 attggacaaccacaatgtcacaagtggcttttttcttt 719060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 6539683 - 6539720
Alignment:
Q  202 aatgtcaccaatatcaccaacgacaatgtcacccaagt 239  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  6539683 aatgtcaccaatatcatcaaccacaatgtcacccaagt 6539720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 49199994 - 49200035
Alignment:
Q  120 ccacaatgtcacaagtggctttcttctttttctttcacaaga 161  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  49199994 ccacaatgtcacaagtgacttttttctttttctttcataaga 49200035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 50754891 - 50754854
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattgg 115  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  50754891 ggataatacttgggtgacattgtggttggtgacattgg 50754854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 593876 - 593824
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtca 130  Q
    |||||||||||||||| |||| | |||||| |||||||  |||||||||||||    
T  593876 ggataatacttgggtgacattatagttggtaatattggttaaccacaatgtca 593824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 246
Target Start/End: Original strand, 39819087 - 39819230
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 202  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  39819087 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaatattgtggttggta 39819186  T
Q  203 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  39819187 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 246
Target Start/End: Original strand, 12918557 - 12918700
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 202  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||       ||||||||||||| ||||||||||||||||||||    
T  12918557 ttggtgacattggccaaccacaatgtcacatgtggcttttttctttttctttcataagacttttttgttgttttgcacatttgtaacattgtggttggta 12918656  T
Q  203 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  12918657 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 246
Target Start/End: Original strand, 15562212 - 15562371
Alignment:
Q  87 ttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgt 186  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||  |||||  ||       ||||||||||||||||||    
T  15562212 ttgggtgacattgtggttgatgacattggccaaccacaatgtcacatgtgactttcttcttttttattcactggatttttttgttgttttgcacacttgt 15562311  T
Q  187 aacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  15562312 aacattgtgattggtaatgtcaccaatatcaccaaccataatgtcacccaaatattatcc 15562371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 7755342 - 7755469
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 184  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||       ||||||||| ||||||    
T  7755342 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgttttgtacactt 7755441  T
Q  185 gtaacattgtggttggtaatgtcaccaa 212  Q
    ||||||||||| ||||||||||||||||    
T  7755442 gtaacattgtgattggtaatgtcaccaa 7755469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 8921498 - 8921557
Alignment:
Q  18 agcacatagtttagcatactttatatagctagattgtcaatgactagatatagtaacagg 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8921498 agcacatagtttagcatactttatatagctagattgtcaatgactagatatagtaacagg 8921557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 234
Target Start/End: Complemental strand, 13421841 - 13421692
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 184  Q
    ||||||||| ||||||||||||||| |||| |||||||||| || ||| ||| ||||||| ||||||||| || |||       ||||||||  ||| ||    
T  13421841 acttgggtgacattgtggttggtgacattgaccaaccacaacgttacatgtgactttcttttttttcttttacgagatttttttgttgttttatacattt 13421742  T
Q  185 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacc 234  Q
    | |||||| |  ||| |||||||| |||| |||||||| || ||||||||    
T  13421741 gaaacattataattgataatgtcatcaatgtcaccaaccacgatgtcacc 13421692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 34563406 - 34563326
Alignment:
Q  79 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 159  Q
    |||||||||| |||| ||| ||||||||||| |||| |||||  |||||||||||||  |||||||| |||||||||||||    
T  34563406 gataatactttggtgacatcgtggttggtgacattgaccaacttcaatgtcacaagtatctttcttcattttctttcacaa 34563326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 8921552 - 8921592
Alignment:
Q  250 aacaggtaaactaattattggtaaggttctttgcttgcttg 290  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  8921552 aacaggtaaactaattattggcaaggttctttgcttgcttg 8921592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 18182631 - 18182591
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttct 146  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  18182631 gtgacattggcaaaccacaatgtcacaagtggctttcttct 18182591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 39819112 - 39819060
Alignment:
Q  188 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 239  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||||||    
T  39819112 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 39819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 12918543 - 12918498
Alignment:
Q  202 aatgtcaccaatatcaccaacgacaatgtcaccc-aagtattatcc 246  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||    
T  12918543 aatgtcaccaatgtcaccaaccacaatgtcacccaaagtattatcc 12918498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 12918700 - 12918663
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattgg 115  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  12918700 ggataatacttgggtgacattgtggttggtgacattgg 12918663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 39819230 - 39819193
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattgg 115  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  39819230 ggataatacttgggtgacattgtggttggtgacattgg 39819193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 85 - 246
Target Start/End: Complemental strand, 2543895 - 2543735
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 184  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| || |||||||||||||| |       |||||||| |||||||    
T  2543895 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttttttttctttcacaa-atttttttgttgttttacacactt 2543797  T
Q  185 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  2543796 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 2543735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 11448063 - 11448224
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 184  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| | | || ||||| |||||||||||||||||         ||||||||||||||||    
T  11448063 acttgggtgacattgtggttggtaatattggccaaccacaatgttatatgtagcttttttctttttctttcacaaattttttttgttgttttgcacactt 11448162  T
Q  185 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11448163 ataacattgtggttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 369578 - 369498
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 158  Q
    |||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  369578 ggataatacttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcaca 369498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 16193888 - 16193830
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaagtg 16193830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 16193757 - 16193888
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 205  Q
    |||||||||||||| |||||||||||||||| ||||||||||| || ||||||| |        | |||||| |||||||| ||||||||||||          
T  16193757 gtgatattggccaatcacaatgtcacaagtgtctttcttctttctccttcacaatattttttt-tagttttgtacacttgtgacattgtggttg------ 16193849  T
Q  206 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
      |||||| |||||||| |||||||||||||||||||||||    
T  16193850 --accaatgtcaccaaccacaatgtcacccaagtattatcc 16193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 28581731 - 28581788
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagt 135  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||    
T  28581731 ggataatacttggctgacattgtggttggtgacattggccaaccacaatgtcataagt 28581788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 2980842 - 2980786
Alignment:
Q  90 ggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttct 146  Q
    |||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  2980842 ggtgacattgtggttggtgaaattggtcaaccataatgtcacaagtggctttcttct 2980786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 35049754 - 35049816
Alignment:
Q  95 cattgtggttggtgatattggccaaccacaatgtcacaagtggc-tttcttctttttctttca 156  Q
    ||||| |||||||||| ||| ||||||||||| | ||||||||| ||||||||||||||||||    
T  35049754 cattgcggttggtgatgttgaccaaccacaatattacaagtggcttttcttctttttctttca 35049816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 11448224 - 11448187
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattgg 115  Q
    |||||||||||||||| |||||||||||||||||||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattgg 11448187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 2543734 - 2543772
Alignment:
Q  77 gggataatacttgggtggcattgtggttggtgatattgg 115  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  2543734 gggataatacttgggtgacattgtggttggtgacattgg 2543772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 28581863 - 28581810
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 159  Q
    ||||||||| |||||  |||| ||||||||| ||||||||||| ||||||||||    
T  28581863 gtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttcacaa 28581810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 1879187 - 1879243
Alignment:
Q  105 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 161  Q
    ||||| ||||| |||||||||||||| ||||| ||||||||| | | ||||||||||    
T  1879187 ggtgacattggtcaaccacaatgtcataagtgactttcttctctatttttcacaaga 1879243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 31846925 - 31846782
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 202  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||    
T  31846925 ttggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattttggttggta 31846826  T
Q  203 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    ||||||| ||| |||||||| | |||||||||||||||||||||    
T  31846825 atgtcacgaatgtcaccaaccataatgtcacccaagtattatcc 31846782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 6607527 - 6607420
Alignment:
Q  105 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaat 204  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  6607527 ggtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaat 6607428  T
Q  205 gtcaccaa 212  Q
    ||||||||    
T  6607427 gtcaccaa 6607420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 31012152 - 31012294
Alignment:
Q  104 tggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaa 203  Q
    |||||| |||| ||||||||||||||||| ||| |||| |||||||||||||||||         ||||||||||| |||||||| ||||||||||||||    
T  31012152 tggtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttttgttgttttgcatacttgtaatattgtggttggtaa 31012251  T
Q  204 tgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    |||||| ||| |||||||| ||||||||||| |||||||||||    
T  31012252 tgtcactaatgtcaccaaccacaatgtcacctaagtattatcc 31012294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 6608375 - 6608500
Alignment:
Q  105 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnn-gttgttttgcacacttgtaacattgtggttggtaa 203  Q
    ||||| |||||||||||| ||||||||| ||||||| ||||||||||||||| ||||        ||||||||||| |||||||||||||||||||||||    
T  6608375 ggtgacattggccaaccataatgtcacacgtggcttccttctttttctttca-aagattctttttgttgttttgcagacttgtaacattgtggttggtaa 6608473  T
Q  204 tgtcaccaatatcaccaacgacaatgt 230  Q
    |||||||||| |||||||| |||||||    
T  6608474 tgtcaccaatgtcaccaaccacaatgt 6608500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 2254622 - 2254698
Alignment:
Q  169 gttgttttgcacacttgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatc 245  Q
    ||||||||| ||||||||||||||||| |||||||| ||| |||| |||| ||| ||||||||||  ||||||||||    
T  2254622 gttgttttgtacacttgtaacattgtgattggtaatatcatcaatgtcacgaaccacaatgtcacataagtattatc 2254698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 54223569 - 54223629
Alignment:
Q  95 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttc 155  Q
    ||||||||||||||| |||| |||||||||||||||||| || ||||||||||| ||||||    
T  54223569 cattgtggttggtgacattgaccaaccacaatgtcacaaatgtctttcttctttctctttc 54223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 11392307 - 11392379
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 159  Q
    ||||||||| ||||||||||| ||| ||||||| |||||||||||||||  ||||||||||| | ||||||||||    
T  11392307 acttgggtgacattgtggttgatgaaattggcctaccacaatgtcacaa--ggctttcttctctctctttcacaa 11392379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 46321429 - 46321496
Alignment:
Q  173 ttttgcacacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 239  Q
    ||||| ||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  46321429 ttttgtacagttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagt 46321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 36273116 - 36273058
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    |||||| ||||||||| ||||||||| |||||||||| ||||||||||| |||||||||    
T  36273116 ggataacacttgggtgacattgtggtcggtgatattgaccaaccacaatatcacaagtg 36273058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 38324974 - 38324924
Alignment:
Q  95 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttc 145  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  38324974 cattgtggttggtgatattggccaaccataatatcacatgtggctttcttc 38324924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 41306750 - 41306689
Alignment:
Q  95 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttca 156  Q
    |||||||||||||||||||| ||||||| |||||||||| ||  |||||||| |||||||||    
T  41306750 cattgtggttggtgatattgaccaaccataatgtcacaaatgtatttcttctctttctttca 41306689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 43063542 - 43063599
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 160  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||  |||||||||||||    
T  43063542 ttggtgacattagccaaccacaatgtcacaagtggctttcatcactttctttcacaag 43063599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 30023694 - 30023646
Alignment:
Q  88 tgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 30023646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 32008336 - 32008402
Alignment:
Q  179 acacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattat 244  Q
    |||||||||||||| |||||||| ||| |||| ||| |||||||| |||||||||||||||| ||||    
T  32008336 acacttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcacccaagtgttat 32008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 33380606 - 33380660
Alignment:
Q  82 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    ||||||| | || ||||||||||||||||||||| |||||||||||| |||||||    
T  33380606 aatacttagatgacattgtggttggtgatattggtcaaccacaatgtaacaagtg 33380660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 53261093 - 53261143
Alignment:
Q  82 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcaca 132  Q
    ||||||| |||| ||||||||||||||| |||| |||||||||||||||||    
T  53261093 aatacttaggtgacattgtggttggtgacattgaccaaccacaatgtcaca 53261143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 9712984 - 9712943
Alignment:
Q  105 ggtgatattggccaaccacaatgtcacaagtggctttcttct 146  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  9712984 ggtgacattgaccaaccacaatgtcacaagtggctttcttct 9712943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 22435379 - 22435419
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttct 146  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  22435379 gtgacattggcaaaccacaatgtcacaagtggctttcttct 22435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 15032020 - 15031965
Alignment:
Q  190 attgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattat 244  Q
    |||||||||||| |||||||| ||||||| |||| |||||||||||||||| ||||    
T  15032020 attgtggttggtcaatgtcacgaatatcatcaaccacaatgtcacccaagtgttat 15031965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 31846900 - 31846952
Alignment:
Q  188 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 239  Q
    |||||||||||||  ||| |||||||| |||||||| ||||||||||||||||    
T  31846900 acattgtggttggccaatatcaccaatgtcaccaaccacaatgtcacccaagt 31846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 40789311 - 40789263
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 133  Q
    ||||||||| ||| | | ||||||||||||||||| |||||||||||||    
T  40789311 acttgggtgacatagagtttggtgatattggccaatcacaatgtcacaa 40789263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 54613082 - 54613030
Alignment:
Q  188 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 239  Q
    |||||||||||||| |||| ||| ||| |||||||| ||||||||||||||||    
T  54613082 acattgtggttggtcaatgccactaatgtcaccaaccacaatgtcacccaagt 54613030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 246
Target Start/End: Complemental strand, 5215722 - 5215560
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggcttt-cttctttttctttcacaagannnnnnngttgttttgcacact 183  Q
    ||||||||| ||||||||||| ||| ||||| |||||||||| ||||| |||||||| ||| ||||||||||||||||       ||||||||| |||||    
T  5215722 acttgggtgacattgtggttgatgacattggtcaaccacaatatcacatgtggcttttcttatttttctttcacaagattttgttgttgttttgtacact 5215623  T
Q  184 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  5215622 tgtaacattgtggttggtaatgtcaccaatgttaccaaccacaatgtcacccaagtattatcc 5215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 9177997 - 9177863
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 184  Q
    |||||| || |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |        |||||||||||||||    
T  9177997 acttggatgacattgtggttggtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttttattgttttgcacactt 9177898  T
Q  185 gtaacattgtggttggtaatgtcaccaatatcacc 219  Q
     ||||||||||||||||| ||||| |||| |||||    
T  9177897 ataacattgtggttggtagtgtcatcaatgtcacc 9177863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 29385419 - 29385303
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 202  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||       ||||||||||||||||||||||||||||||||||    
T  29385419 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcgctagatttttttgttgttttgcacacttgtaacattgtggttggta 29385320  T
Q  203 atgtcaccaatatcacc 219  Q
    || |||| ||| |||||    
T  29385319 atatcactaatgtcacc 29385303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 19417469 - 19417595
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 202  Q
    ||||||| ||||| |||| ||||||||||| ||| |||||||  |||||||||||||||       ||||||||||||||||| ||||||||||||||||    
T  19417469 ttggtgacattggtcaactacaatgtcacatgtgactttctttcttttctttcacaagatttttttgttgttttgcacacttg-aacattgtggttggta 19417567  T
Q  203 atgtcaccaatatcaccaacgacaatgt 230  Q
    ||||||||||| |||||||| |||||||    
T  19417568 atgtcaccaatgtcaccaaccacaatgt 19417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 36568736 - 36568872
Alignment:
Q  111 attggccaaccacaa-tgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcac 209  Q
    ||||| ||||||||| ||||||| |||||||||||| ||||||||||||| |       ||||||||| ||||||||||||||||||||| | |||||||    
T  36568736 attggtcaaccacaaatgtcacatgtggctttcttccttttctttcacaatatttttt-gttgttttgtacacttgtaacattgtggttgattatgtcac 36568834  T
Q  210 caatatcaccaacgacaatgtcacccaagtattatcca 247  Q
     ||| |||||||| ||||||||||  ||||||||||||    
T  36568835 taatgtcaccaaccacaatgtcacataagtattatcca 36568872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 1840003 - 1840053
Alignment:
Q  111 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 161  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1840003 attggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga 1840053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 23219432 - 23219360
Alignment:
Q  87 ttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 159  Q
    ||||||| |||||||||||||||  ||||||||||||||||||| |  || ||||||||||||||||||||||    
T  23219432 ttgggtgacattgtggttggtgaccttggccaaccacaatgtcatatatgactttcttctttttctttcacaa 23219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 896268 - 896350
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 160  Q
    |||||| |||||||||  |||||||||||||||||||  |||||||||||||||| | || |||||||||| ||||| |||||    
T  896268 ggataacacttgggtgagattgtggttggtgatattgatcaaccacaatgtcacaggcggttttcttctttctcttttacaag 896350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 218
Target Start/End: Complemental strand, 25879447 - 25879328
Alignment:
Q  95 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgt 194  Q
    ||||||||||||||||||| |||||||||||||||||| |||  |||    |||||   ||||||||        |||||||  ||||||||||||||||    
T  25879447 cattgtggttggtgatattagccaaccacaatgtcacatgtgatttt----ttttttcgtcacaagacttttttattgttttatacacttgtaacattgt 25879352  T
Q  195 ggttggtaatgtcaccaatatcac 218  Q
    ||||| ||||||||||||||||||    
T  25879351 ggttgataatgtcaccaatatcac 25879328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 42772107 - 42772054
Alignment:
Q  95 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttcttt 148  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  42772107 cattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttcttt 42772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 31848177 - 31848239
Alignment:
Q  98 tgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 161  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||||||| | ||||||||||||    
T  31848177 tgtggttggtgatattgaccaaccacaaggtcacaagtgg-tttcttctctctctttcacaaga 31848239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 7137698 - 7137637
Alignment:
Q  180 cacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagta 240  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||  ||||||||||||||||    
T  7137698 cacttgtgacattgtggttggtcaatgtcaccaatttcaccaactgcaatgtcacccaagta 7137637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 7137665 - 7137721
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 159  Q
    ||||||| |||| ||||||||||||||||||||| |||||||| || ||||||||||    
T  7137665 ttggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaa 7137721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 41288041 - 41287997
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaacca 122  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||    
T  41288041 ggataatatttgggtgacattgtggttggtgatattggccaacca 41287997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 12605715 - 12605660
Alignment:
Q  77 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcaca 132  Q
    ||||||||||||  ||| ||||||||||||||| ||||| ||||||||||||||||    
T  12605715 gggataatacttaagtgacattgtggttggtgacattggtcaaccacaatgtcaca 12605660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 29385394 - 29385446
Alignment:
Q  188 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 239  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||||||    
T  29385394 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 29385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 5998659 - 5998620
Alignment:
Q  108 gatattggccaaccacaatgtcacaagtggctttcttctt 147  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  5998659 gatattggccaaccacaatatcacaagtgactttcttctt 5998620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Complemental strand, 37325664 - 37325634
Alignment:
Q  111 attggccaaccacaatgtcacaagtggcttt 141  Q
    |||||||||||||||||||||||||||||||    
T  37325664 attggccaaccacaatgtcacaagtggcttt 37325634  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 41288004 - 41288042
Alignment:
Q  209 ccaatatcaccaacgacaatgtcacccaagtattatcca 247  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  41288004 ccaatatcaccaaccacaatgtcacccaaatattatcca 41288042  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 19417479 - 19417442
Alignment:
Q  202 aatgtcaccaatatcaccaacgacaatgtcacccaagt 239  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  19417479 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 19417442  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 105 - 246
Target Start/End: Original strand, 43465112 - 43465256
Alignment:
Q  105 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacatt---gtggttggt 201  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||||       ||||||||||||||||||||||||   |||||||||    
T  43465112 ggtgacattggccaaccacaatatcacatgtggctttcttctttttttttcacaagatttttttgttgttttgcacacttgtaacattgtggtggttggt 43465211  T
Q  202 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    ||| |||||||| |||||||| | ||||||| |||||||||||||    
T  43465212 aatttcaccaatgtcaccaaccagaatgtcatccaagtattatcc 43465256  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 247
Target Start/End: Original strand, 31470771 - 31470914
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 204  Q
    |||| |||| ||||||||||||||||||||  | |||||||||||||||||||| |       |||  |||| |||||||| |||||||||||||  |||    
T  31470771 gtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggccaat 31470870  T
Q  205 gtcaccaatatcaccaacgacaatgtca-cccaagtattatcca 247  Q
    |||||||||| ||||||| ||||| ||| |||||||||||||||    
T  31470871 gtcaccaataccaccaaccacaatatcaccccaagtattatcca 31470914  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 16687585 - 16687512
Alignment:
Q  174 tttgcacacttgtaacattgtggttgg-taatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    |||| |||||||  ||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||    
T  16687585 tttgtacacttgggacattgtggttagctaatgtcaccaatatcaccaaccacaatgtcatccaagtattatcc 16687512  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 1605038 - 1605082
Alignment:
Q  202 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 246  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  1605038 aatgtcaccaatgtcaccaactacaatgtcacccaagtattatcc 1605082  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 4531902 - 4531845
Alignment:
Q  78 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagt 135  Q
    |||||| |||| | || |||||| ||||||||||||| ||||||||||||||||||||    
T  4531902 ggataaaacttagatgacattgtagttggtgatattgaccaaccacaatgtcacaagt 4531845  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 7931655 - 7931550
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 204  Q
    |||| |||||| |||||||||||||||| || ||||||||||| ||||||| || |       |||  |||| |||||||| |||||||||||||| |||    
T  7931655 gtgacattggcaaaccacaatgtcacaaatgtctttcttctttctctttcataatatttttttgtttctttgtacacttgtgacattgtggttggtcaat 7931556  T
Q  205 gtcacc 210  Q
    ||||||    
T  7931555 gtcacc 7931550  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 16687511 - 16687549
Alignment:
Q  77 gggataatacttgggtggcattgtggttggtgatattgg 115  Q
    |||||||||||||| || |||||||||||||||||||||    
T  16687511 gggataatacttggatgacattgtggttggtgatattgg 16687549  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 33763589 - 33763539
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttca 156  Q
    |||| ||||| |||| ||||| ||||||||| |||||||||||||||||||    
T  33763589 gtgacattggtcaactacaatatcacaagtgcctttcttctttttctttca 33763539  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 31470878 - 31470845
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtg 136  Q
    ||||||| ||||||||||||||||||||||||||    
T  31470878 ttggtgacattggccaaccacaatgtcacaagtg 31470845  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 45051380 - 45051343
Alignment:
Q  95 cattgtggttggtgatattggccaaccacaatgtcaca 132  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  45051380 cattgtggttggtgacattggccgaccacaatgtcaca 45051343  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 33763461 - 33763505
Alignment:
Q  82 aatacttgggtggcattgtggttggtgatattggccaaccacaat 126  Q
    |||| ||||||| ||||||||||||||| ||||| ||||||||||    
T  33763461 aataattgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

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Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 12270 - 12225
Alignment:
Q  202 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 247  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||    
T  12270 aatgtcatcaatgtcaccaactacaatgtcacccaagtattatcca 12225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 12338 - 12285
Alignment:
Q  106 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 159  Q
    |||| |||| ||||||||||||||||||||| | ||||||||| ||||||||||    
T  12338 gtgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaa 12285  T

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Target: scaffold1315 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 1819 - 1870
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||    
T  1819 acttgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtg 1870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 252 - 201
Alignment:
Q  85 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||    
T  252 acttgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtg 201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 507740 - 507798
Alignment:
Q  103 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 161  Q
    ||||||| |||| |||| |||||| | |||||||| |||||||||| ||||||||||||    
T  507740 ttggtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaaga 507798  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 26500 - 26557
Alignment:
Q  79 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 136  Q
    ||||||||||  ||| ||||||||||||||| ||||| ||| |||||| |||||||||    
T  26500 gataatacttatgtgacattgtggttggtgacattggtcaaacacaatatcacaagtg 26557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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