View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18813_low_1 (Length: 608)
Name: NF18813_low_1
Description: NF18813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18813_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 16 - 565
Target Start/End: Original strand, 25931681 - 25932233
Alignment:
| Q |
16 |
agttgttttacatcaacttcttaaaatatgttcaaatgaaaataaacaaaaatttcatatttgacataccatagcgttgtttccaggtttcaaaatatgg |
115 |
Q |
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| T |
25931681 |
agttgttttacctcatcttcttaaaatatgttcaaatgaaaataaacaaaaatttcatatttgacataccgtagcgttgtttccaggtttcaaaatatgg |
25931780 |
T |
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| Q |
116 |
gaacattgaataaacccattcctcagttgaatcagcaccagcaggaggttgaggacgaatctgttgcatctcagaaatgttaccaaatgggaaagaaggc |
215 |
Q |
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| T |
25931781 |
gaacaaggaataaacccattcctcagttgaatcagcaccagcaggaggttggggacgaatctgttgcatctcagaaatgttaccaaatgggaaagaaggc |
25931880 |
T |
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| Q |
216 |
tttggtcctttgataccttgtttttcaagcaccgatcgaatccttcgtggcttcagcaacactttctccaacaatatcgtaacactggttatcactatca |
315 |
Q |
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| T |
25931881 |
tttggtcctttgataccttgtttttcaagcaccgatcgaatccttcgtggcttcagtaacactttctccaacaatattataacactggttatcactatca |
25931980 |
T |
|
| Q |
316 |
tccacactgtccaatataacttgttcattgctatctccatcatatcacccctctctctttttgtgctcacactgaaatgtttgatttatactcccgagtt |
415 |
Q |
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| T |
25931981 |
tccacactgtccaatataacttgttcattgctatctccatgatatcacccctctctctttttgtgctcacactgaaatgtttgatttatactctcaaatt |
25932080 |
T |
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| Q |
416 |
ttatacacttttactatttgacaagtgtccttgactagggtatttataatagcaannnnnnnnnnnnnncacacatttgaatacaaagcacctgttatag |
515 |
Q |
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| T |
25932081 |
ttatacactttttctatttgacaagtgtccttgacttgggtatttataatagcaattttttccttttttcacacatttgaatacaaagcacttgtgatag |
25932180 |
T |
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| Q |
516 |
tctccacttgacaag---taatagaagcttccaaagtaaaattaatcataaaa |
565 |
Q |
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| T |
25932181 |
gctccacttgacaagtaataatagaagcttccaaagtaaaattaatcataaaa |
25932233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 74 - 307
Target Start/End: Complemental strand, 26132833 - 26132597
Alignment:
| Q |
74 |
atttgacataccatagcgttgtttccaggtttcaaaatatgggaacattgaataaacccattcctcagtt---gaatcagcaccagcaggaggttgagga |
170 |
Q |
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| T |
26132833 |
atttgacataccatagtgttgcttccaggtgtgaaaatgtgggaacaaagaaccaatccattcttcattaaacgaatcggcagatgcaggagattgaaga |
26132734 |
T |
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| Q |
171 |
cgaatctgttgcatctcagaaatgttaccaaatgggaaagaaggctttggtcctttgataccttgtttttcaagcaccgatcgaatccttcgtggcttca |
270 |
Q |
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| T |
26132733 |
tgaatttgtcgcaactctgaaatgttaccaaagagaaaagaaggttttggtccattgataccttgtttttccagcatcaatcgaatccttcgcggtgtta |
26132634 |
T |
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| Q |
271 |
gcaacactttctccaacaatatcgtaacactggttat |
307 |
Q |
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| T |
26132633 |
acaacactttctctaacaatgttataacactgcttat |
26132597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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