View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18813_low_10 (Length: 215)

Name: NF18813_low_10
Description: NF18813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18813_low_10
NF18813_low_10
[»] chr7 (3 HSPs)
chr7 (3-207)||(707590-707794)
chr7 (5-207)||(28556995-28557197)
chr7 (70-183)||(41385287-41385400)
[»] chr8 (2 HSPs)
chr8 (1-172)||(36900324-36900495)
chr8 (1-207)||(17706906-17707092)
[»] chr2 (3 HSPs)
chr2 (100-206)||(31559068-31559174)
chr2 (70-183)||(22059654-22059767)
chr2 (70-177)||(42827789-42827896)
[»] chr6 (5 HSPs)
chr6 (57-206)||(1134507-1134655)
chr6 (70-183)||(7799704-7799817)
chr6 (110-183)||(19401655-19401728)
chr6 (70-183)||(19597457-19597570)
chr6 (70-174)||(19581063-19581167)
[»] scaffold0129 (1 HSPs)
scaffold0129 (70-183)||(3748-3861)
[»] chr4 (2 HSPs)
chr4 (129-201)||(42225765-42225837)
chr4 (104-183)||(28427325-28427404)
[»] chr3 (3 HSPs)
chr3 (100-206)||(34594665-34594771)
chr3 (90-177)||(5386732-5386819)
chr3 (70-132)||(31200078-31200140)
[»] scaffold0140 (1 HSPs)
scaffold0140 (65-206)||(35914-36055)
[»] chr1 (3 HSPs)
chr1 (70-183)||(31815261-31815374)
chr1 (65-206)||(23573220-23573361)
chr1 (128-206)||(7384449-7384527)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 707590 - 707794
Alignment:
Q  3 agcctaaacaataaaataaacatattaagcttttaattaaattaaacttctttaaaaatatacaacaaacatagtattataacaacgaactcaccgtaaa 102  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||| |||||||||    
T  707590 agcctaaacaataaattaaacatattaagcttttaattaaattaaactttgttaaaattatacaacaaacatagtattataacaacgaacacaccgtaaa 707689  T
Q  103 ggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgattttgttgcacccacatataagcaattcaattgat 202  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  707690 ggttggacatttccaatatctccttttagggttttcatttaaattggagatgaacatccttatgattttgttgcacccacatataggcaattcaattgat 707789  T
Q  203 gatgt 207  Q
    |||||    
T  707790 gatgt 707794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 28556995 - 28557197
Alignment:
Q  5 cctaaacaataaaataaacatattaagcttttaattaaattaaacttctttaaaaatatacaacaaacatagtattataacaacgaactcaccgtaaagg 104  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  28556995 cctacacaataaattaaacatattaagcttttaattaaattaaactttgttaaaattatacaacaatcatagtattataacaacgaactcaccgtaaagg 28557094  T
Q  105 ttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgattttgttgcacccacatataagcaattcaattgatga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28557095 ttggacatttccaatatctccttttaggattttcatttaaattggagatgaacatccttatgattttgttgcacccacatataggcaattcaattgatga 28557194  T
Q  205 tgt 207  Q
    |||    
T  28557195 tgt 28557197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 41385287 - 41385400
Alignment:
Q  70 aacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgatt 169  Q
    |||| ||||||| |||| | |||||||  || |||||||  |||||||||||||||||||||| || |||  | |||| || |||||||| || || |||    
T  41385287 aacaaagtattacaacagcaaactcacaatataggttgggtatttccaatatctccttttagggttgtcaagtgaattggatatgaacattctcataatt 41385386  T
Q  170 ttgttgcacccaca 183  Q
    |||||||| |||||    
T  41385387 ttgttgcaaccaca 41385400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 36900495 - 36900324
Alignment:
Q  1 gcagcctaaacaataaaataaacatattaagcttttaattaaattaaacttctttaaaaatatacaacaaacatagtattataacaacgaactcaccgta 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||    
T  36900495 gcagcctaaacaataaattaaacatattaagcttttaattaaattaaactttgttaaaattatacaacaaacatagtattataacaacgaactcaccgta 36900396  T
Q  101 aaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgattttg 172  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  36900395 aaggttggacattttcaatatctccttttagggttttcatttaaattggagatgaacatccttatgattttg 36900324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 17706906 - 17707092
Alignment:
Q  1 gcagcctaaacaataaaataaacatattaagcttttaattaaattaaacttctttaaaaatatacaacaaacatagtattataacaacgaactcaccgta 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| |||||                   ||||||||||||||||    
T  17706906 gcagcctaaacaataaattaaacatattaagcttttaattaaattaaactttgttaaaattatac-------------------caacgaactcaccgta 17706986  T
Q  101 aaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgattttgttgcacccacatataagcaattcaattg 200  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  17706987 aaggttggacatttccaatatcttcttt-agggttttcatttaaattggagatgaacatccttatgattttgttgcgcccacatataggtaattcaattg 17707085  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 31559068 - 31559174
Alignment:
Q  100 aaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgattttgttgcacccacatataagcaattcaatt 199  Q
    ||||||||| ||||||||||||||| ||||||| || | || |||||| |||||||||||||| || ||||||||||| ||||||||| |||| ||||||    
T  31559068 aaaggttgggcatttccaatatctcgttttagggttgtaatataaattggagatgaacatcctcattattttgttgcaaccacatataggcaactcaatt 31559167  T
Q  200 gatgatg 206  Q
    |||||||    
T  31559168 gatgatg 31559174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 22059654 - 22059767
Alignment:
Q  70 aacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgatt 169  Q
    |||| ||||||| |||| | |||||||| || ||||||| |||||||| |||||||||||||| ||||||| | |||| || |||||||| || ||||||    
T  22059654 aacaaagtattacaacagcaaactcaccatataggttgggcatttccagtatctccttttagggttttcatgtgaattggatatgaacattctcatgatt 22059753  T
Q  170 ttgttgcacccaca 183  Q
    |||||||| |||||    
T  22059754 ttgttgcaaccaca 22059767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 42827896 - 42827789
Alignment:
Q  70 aacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgatt 169  Q
    |||| ||||||| |||| | |||||||| || ||||||   |||||||||||||||||||||| || |||  | |||| || |||||||| || || |||    
T  42827896 aacaaagtattacaacagcaaactcaccatataggttgtgtatttccaatatctccttttagggttgtcaagtgaattggatatgaacattctcataatt 42827797  T
Q  170 ttgttgca 177  Q
    ||||||||    
T  42827796 ttgttgca 42827789  T

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Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 1134655 - 1134507
Alignment:
Q  57 aaaatatacaacaaacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaa 156  Q
    |||||| |||| ||||| | ||||||||||||  | ||||| |||||||||| ||||||||||||||| ||||||| || |||| | |||| ||||||||    
T  1134655 aaaataaacaaaaaacaaactattataacaacacattcaccataaaggttgggcatttccaatatctctttttagg-ttgtcatgtgaattggagatgaa 1134557  T
Q  157 catccttatgattttgttgcacccacatataagcaattcaattgatgatg 206  Q
    |||||| || ||||| ||||| ||||||||| |||| | | |||||||||    
T  1134556 catcctcataatttttttgcaaccacatataggcaactgatttgatgatg 1134507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 7799704 - 7799817
Alignment:
Q  70 aacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgatt 169  Q
    |||| ||||||| |||| | |||||||| || ||||||| |||||||| |||||||||||||| ||| || || |||| || ||||||||  | ||||||    
T  7799704 aacaaagtattacaacagcaaactcaccatataggttgggcatttccagtatctccttttagggtttgcacttgaattggatatgaacattttcatgatt 7799803  T
Q  170 ttgttgcacccaca 183  Q
    |||||||| |||||    
T  7799804 ttgttgcaaccaca 7799817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 19401655 - 19401728
Alignment:
Q  110 catttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgattttgttgcacccaca 183  Q
    |||||||| |||||||||||||| ||||||  | |||| || |||||||| || |||||||||||||| |||||    
T  19401655 catttccagtatctccttttagggttttcacgtgaattggatatgaacattctcatgattttgttgcaaccaca 19401728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 19597457 - 19597570
Alignment:
Q  70 aacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgatt 169  Q
    |||| ||||||| |||| | |||||||| || |||||||  |||| ||||||||||||||||| || |||  | |||| || |||||||| || || |||    
T  19597457 aacaaagtattacaacagcaaactcaccatataggttgggtattttcaatatctccttttagggttgtcaactgaattggatatgaacattctcataatt 19597556  T
Q  170 ttgttgcacccaca 183  Q
    |||||||| |||||    
T  19597557 ttgttgcaaccaca 19597570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 19581063 - 19581167
Alignment:
Q  70 aacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgatt 169  Q
    |||| ||||||| |||| | |||| ||| || |||||||  |||||||||||||||||||||  || ||| || |||| || |||||||| || || |||    
T  19581063 aacaaagtattacaacagcaaactaaccatacaggttgggtatttccaatatctccttttagagttgtcaattgaattggatatgaacattctcataatt 19581162  T
Q  170 ttgtt 174  Q
    |||||    
T  19581163 ttgtt 19581167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 3748 - 3861
Alignment:
Q  70 aacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgatt 169  Q
    |||| ||||||| |||| | |||||||| || ||||||| |||||||| |||||||||||||| ||||||| | |||| || |||||||| || ||||||    
T  3748 aacaaagtattacaacagcaaactcaccatataggttgggcatttccagtatctccttttagggttttcatgtgaattggatatgaacattctcatgatt 3847  T
Q  170 ttgttgcacccaca 183  Q
    |||||||| |||||    
T  3848 ttgttgcaaccaca 3861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 42225837 - 42225765
Alignment:
Q  129 taggattttcatttaaattagagatgaacatccttatgattttgttgcacccacatataagcaattcaattga 201  Q
    |||| ||||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  42225837 tagggttttcatttgaattggagatgaacatcctcatgattttgttgcaaccacatataagcaattaaattga 42225765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 28427404 - 28427325
Alignment:
Q  104 gttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgattttgttgcacccaca 183  Q
    ||||| ||||||||||||||| ||||||| |||||| || |||| || |||||||||||   | |||||||||| |||||    
T  28427404 gttgggcatttccaatatctctttttagggttttcaattgaattggatatgaacatcctcgcggttttgttgcaaccaca 28427325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 34594771 - 34594665
Alignment:
Q  100 aaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgattttgttgcacccacatataagcaattcaatt 199  Q
    ||||||||||||||| |||||||| ||||||||||| |||| | |||| ||||||||||||||  | ||||| ||||| | | ||||| |||| ||||||    
T  34594771 aaaggttggacattttcaatatcttcttttaggattgtcatgtgaattggagatgaacatcctcgttattttattgcaactatatataggcaactcaatt 34594672  T
Q  200 gatgatg 206  Q
    |||||||    
T  34594671 gatgatg 34594665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 5386732 - 5386819
Alignment:
Q  90 aactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgattttgttgca 177  Q
    ||||||| ||| | ||||| ||||||||||| ||||||||||| |||||| || |||| || || |||||||| ||| ||||||||||    
T  5386732 aactcacggtatatgttgggcatttccaatacctccttttagggttttcaattgaattggatattaacatcctcatggttttgttgca 5386819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 31200140 - 31200078
Alignment:
Q  70 aacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttagg 132  Q
    |||| ||||||| |||| | |||||||| || |||||||  ||||||||||||||||||||||    
T  31200140 aacaaagtattacaacatcaaactcaccatataggttgggtatttccaatatctccttttagg 31200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 36055 - 35914
Alignment:
Q  65 caacaaacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatcctta 164  Q
    ||||||||| |||||||||  ||  |||||||| |||| ||||| |||||||| |||||||||||||| || ||| || |||| ||||| |||||| | |    
T  36055 caacaaacaaagtattatacaaaataactcaccataaatgttgggcatttccagtatctccttttagggttgtcaattgaatttgagataaacatcttca 35956  T
Q  165 tgattttgttgcacccacatataagcaattcaattgatgatg 206  Q
    |  |||||||||| ||||| ||| ||| ||||||||| ||||    
T  35955 ttgttttgttgcaaccacaaataggcatttcaattgaagatg 35914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 31815261 - 31815374
Alignment:
Q  70 aacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatccttatgatt 169  Q
    |||| ||||||| |||| | |||||| | || ||||||| |||||||| |||||||||||||| ||||||| | |||| || |||||||| || ||||||    
T  31815261 aacaaagtattacaacagcaaactcatcatataggttgggcatttccagtatctccttttagggttttcatgtgaattggatatgaacattctcatgatt 31815360  T
Q  170 ttgttgcacccaca 183  Q
    |||||||| |||||    
T  31815361 ttgttgcaaccaca 31815374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 23573361 - 23573220
Alignment:
Q  65 caacaaacatagtattataacaacgaactcaccgtaaaggttggacatttccaatatctccttttaggattttcatttaaattagagatgaacatcctta 164  Q
    |||||| || |||||||||  ||  |||||||| |||| ||||| |||||||| ||||||||||||||||| ||| || |||| ||||| |||||| | |    
T  23573361 caacaatcaaagtattatacaaaataactcaccataaatgttgggcatttccagtatctccttttaggattctcagttgaatttgagataaacatcttca 23573262  T
Q  165 tgattttgttgcacccacatataagcaattcaattgatgatg 206  Q
    |  |||||||||| ||||| ||| ||| |||| |||| ||||    
T  23573261 ttgttttgttgcaaccacaaataggcatttcagttgaagatg 23573220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 7384449 - 7384527
Alignment:
Q  128 ttaggattttcatttaaattagagatgaacatccttatgattttgttgcacccacatataagcaattcaattgatgatg 206  Q
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T  7384449 ttagggtttttatttgaattggagatgaacatcctcataattttgttgcacgcacatataggcaactcaattgaagatg 7384527  T

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