View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18813_low_3 (Length: 551)
Name: NF18813_low_3
Description: NF18813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18813_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 2057009 - 2057515
Alignment:
| Q |
17 |
tctacctcacttcacaccaagtttacaagttgaataagtcactttatggacttagacaagcctcgagacactgctttcaaaaattcagttccacaatctt |
116 |
Q |
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| T |
2057009 |
tctacctcacttcactccaagtttacaagttgaataagtcactttatggacttagacaagcctcgagacactgctttcaaaaattcagttccacaatctt |
2057108 |
T |
|
| Q |
117 |
caaattgggattcaaacaaaattttgcagagaattcgttatttaccaatggctcgggtaatagttttgtagcacttcgagttacaacatatgtggatgat |
216 |
Q |
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| T |
2057109 |
caaattgggattcaaacaaaattttgcagagaattcgttatttaccaatggctcgggtaatagttttgtagcacttcgagttacaacatatgtggatgat |
2057208 |
T |
|
| Q |
217 |
caaccaattggttttgcatctatcttggagaattcttgattacttggaagtcaaggaaacaatcaacaaagtcacgttcatcgactgaggctgagtatcg |
316 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2057209 |
caaccaattgattttgcatctatcttggagaattcttgattacttggaagtcaaggaaacaatcaacaaagtcac-----------gaggctgagtatcg |
2057297 |
T |
|
| Q |
317 |
tgctttagcagttgtaaccaatgagttgttatggattaaacagctccttagagcttttgaaattgatatgtctacatctatggctctgtgtgatagcaag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2057298 |
tgctttagcagttgtaaccaatgagttgttatggattaaacagctccttagagcttttgaaattgatatgtctacatctatggctctgtgtgatagcaag |
2057397 |
T |
|
| Q |
417 |
tcagccatacaacttgccaacgatccaactacgaatgtgaagtcaaaacataattcatatgtaagtctagtcaacaattgtcaaaccctcttacaaatca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2057398 |
tcagccatacaacttgccaacgatccaactacgaatgtgaagtcaaaacataattcatatgtaagtctagtcaacaattgtcaaaccctcttacaaatca |
2057497 |
T |
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| Q |
517 |
ctttcataaagttcaatt |
534 |
Q |
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|||||||||||||||||| |
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| T |
2057498 |
ctttcataaagttcaatt |
2057515 |
T |
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