View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18814_high_3 (Length: 353)

Name: NF18814_high_3
Description: NF18814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18814_high_3
NF18814_high_3
[»] chr1 (3 HSPs)
chr1 (109-171)||(45427962-45428024)
chr1 (279-334)||(45427596-45427652)
chr1 (138-171)||(45428368-45428401)
[»] chr5 (1 HSPs)
chr5 (262-334)||(41462513-41462586)
[»] chr8 (1 HSPs)
chr8 (261-332)||(16218600-16218672)


Alignment Details
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 45428024 - 45427962
Alignment:
Q  109 caatttagggatttttgatgtaagggttcttcaataagtggaaattaatttggggatttcaga 171  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  45428024 caatttagggatttttgatgttaaggttcttcaataagtggaaattaatttggggatttcaga 45427962  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 45427652 - 45427596
Alignment:
Q  279 taaacgataaatcatgtaagca-tgctacataagttccatgtcattaatgagcatgt 334  Q
    |||||||||||||||||||||| | |||||||||||||||||||| |||||||||||    
T  45427652 taaacgataaatcatgtaagcaattctacataagttccatgtcatcaatgagcatgt 45427596  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 45428368 - 45428401
Alignment:
Q  138 ttcaataagtggaaattaatttggggatttcaga 171  Q
    ||||||||||||||||||||||||||||||||||    
T  45428368 ttcaataagtggaaattaatttggggatttcaga 45428401  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 41462513 - 41462586
Alignment:
Q  262 acatggaaatgaggtattaaacgataaatcatgtaagc-atgctacataagttccatgtcattaatgagcatgt 334  Q
    ||||||||||||||| ||||| ||||| |||||||||| |||  || |||| ||||||||||||||||||||||    
T  41462513 acatggaaatgaggttttaaatgataagtcatgtaagcaatgtcacgtaagctccatgtcattaatgagcatgt 41462586  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 16218672 - 16218600
Alignment:
Q  261 gacatggaaatgaggtattaaacgataaatcatgtaagc-atgctacataagttccatgtcattaatgagcat 332  Q
    |||| ||||||||||||||||| ||||| |||||||||| |||| || |||| | |||| |||||||||||||    
T  16218672 gacaaggaaatgaggtattaaatgataagtcatgtaagcaatgccacgtaagcttcatgccattaatgagcat 16218600  T

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