View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18814_high_7 (Length: 242)
Name: NF18814_high_7
Description: NF18814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18814_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 26147020 - 26147224
Alignment:
| Q |
23 |
tagatgacatccttatttgtttaaccaggaaattatgcatgtgttatcaattcgagaaaatgctagacttcaaggttttccagacttttataagctatgt |
122 |
Q |
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| T |
26147020 |
tagatgacatccttatttgtttaaccaggaaattatgcatgtgttatcaattcgagaaaatgctagacttcaaggttttccagacttttataagctatgt |
26147119 |
T |
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| Q |
123 |
ggacctataaaacaaaggtaattgaccatcttatttctgtttgtagtcatatggtttatattcacacaaggaagcttaatccaaaccagatttggactgt |
222 |
Q |
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| T |
26147120 |
ggacctataaaacaaaggtaattgaccatcttatttctgtttgtagtcatatggtttatattcacacaaggaagcttaatccaaaccagatttggactgt |
26147219 |
T |
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| Q |
223 |
ctgtg |
227 |
Q |
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||||| |
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| T |
26147220 |
ctgtg |
26147224 |
T |
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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 33848316 - 33848219
Alignment:
| Q |
78 |
gaaaatgctagacttcaaggttttccagacttttataagctatgtggacctataaaacaaaggtaa-ttgaccatcttatttctgtttgtagtcatat |
174 |
Q |
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| T |
33848316 |
gaaaatgctagattacaaggttttccagacttttataagctttgtggatctgttaaagaaaggtaaatttgtaatcttatttctgtttgtagtcatat |
33848219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 28216232 - 28216283
Alignment:
| Q |
67 |
tatcaattcgagaaaatgctagacttcaaggttttccagacttttataagct |
118 |
Q |
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| T |
28216232 |
tatccattcgtggaaatgctagattacaaggttttccagacttttataagct |
28216283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 28227084 - 28227135
Alignment:
| Q |
67 |
tatcaattcgagaaaatgctagacttcaaggttttccagacttttataagct |
118 |
Q |
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|||| ||||| | |||||||||| | |||||||||||||||||||||||||| |
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| T |
28227084 |
tatccattcgtggaaatgctagattacaaggttttccagacttttataagct |
28227135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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