View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18814_low_1 (Length: 992)

Name: NF18814_low_1
Description: NF18814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18814_low_1
NF18814_low_1
[»] chr2 (9 HSPs)
chr2 (21-992)||(31704907-31705858)
chr2 (631-878)||(31717441-31717684)
chr2 (355-419)||(31701453-31701517)
chr2 (339-418)||(31690168-31690247)
chr2 (345-419)||(31683083-31683157)
chr2 (23-224)||(31683833-31684036)
chr2 (632-771)||(31682137-31682273)
chr2 (637-771)||(31689572-31689704)
chr2 (33-105)||(31691406-31691478)


Alignment Details
Target: chr2 (Bit Score: 699; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 21 - 992
Target Start/End: Complemental strand, 31705858 - 31704907
Alignment:
Q  21 acctcataagataacatatcattgaataccttgtcttcttggtcattgcaagttgtcaagatctcgaaaaaactagataattttttattaccacggaaat 120  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||                   || |    
T  31705858 acctcataagataacatatcattgaataccttgtcttcttcgtcgttgcaagttgttaagatctcgaaaaaactaga-------------------aact 31705778  T
Q  121 ttgttggtgatatgccttgctgtcatgaaatcagatataacgaaacaatttaccgaacttcaaacatgtatatctgataaacttcattaaaatttgtttt 220  Q
    || |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31705777 ttattggggatatgccttgctgtcatgaaatcagatataacgaaacatttaaccgaacttcaaacatgtatatctgataaacttcataaaaatttgtttt 31705678  T
Q  221 tcaagaactaagatagatccaaattgttannnnnnnnnnnatcaataatatggatcttgtatctaaatactcaaatttgtgacaataagagcctcgtatt 320  Q
    |||||||||||||||| ||||||||| ||           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31705677 tcaagaactaagataggtccaaattgatatatttttttt-atcaataatatggatctagtatctaaatactcaaatttgtgacaataagagcctcgtatt 31705579  T
Q  321 gaagaataacttattgattatatttactcacaacatgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcaggn 420  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31705578 gaaaaataacttattgattatatttactcacaacatgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcagga 31705479  T
Q  421 nnnnnngtgattaataactttgcatattaaattcagtgacaaagaacctataaatttaacactgttgaatgattaaaagtttcagaatataagttgcatg 520  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31705478 aaaaaagtgattaataactttgcatattaaattcagtgacaaagaacctataaatttaacacttttgaatgattaaaagtttcagaatataagttgcatg 31705379  T
Q  521 gaagaggaagaaaaattcttgtataaacacaggcttctcagactatattagattatctcgttgttactcccgtcccggtgctctctggaatcccctacac 620  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  31705378 gaagaggaagaaaaattcttgtataaacacaggcttctcagactatattagattatgtcattgttactcccgtcccggtgctctctggaatcccctacac 31705279  T
Q  621 ttcagaaaattattgtttacctttcaaatacagttccttctatgcttgcattctccacaaattgaagagtacttgcttgattttttgctttaaattcttc 720  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31705278 ttcagaaaattattgtttacctttcaaatacagttccttctatgcttgcattctccacaaattgaagagtacttgcttgattttttgctttaaattcttc 31705179  T
Q  721 aataatatttttgtcctatcataaataaaaaagaatagccaaacttgtaaacaatccaaagaaaaaggaaattggaattaatgtgttgtacgcttcagaa 820  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31705178 aagaatatttttgtcctatcataaataaaaaagaatagccaaacttgtaaacaatccaaagaaaaaggaaattggaattaatgtgttgtacgcttcagaa 31705079  T
Q  821 gtcgtcaactgttctcaaaattttatgaatatctttcagaatgttcaacatatgcataannnnnnnncctagtcgattgtgt-nnnnnnnnnnngttcct 919  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||        |||||||||||||||            ||||||    
T  31705078 gtcgtcaacttttctcaaaa-tttatgaatatctttcagaatgttcaacgtatgcataattttttttcctagtcgattgtgtaaaaaaaaaaaggttcct 31704980  T
Q  920 agtcgatataatctttctattggatataataaactttgaccctaaatattgatacattgatactggtaataat 992  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31704979 agtcgatataatctttctattggatataataaactttgaccctaaatattgatacattgataccggtaataat 31704907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 631 - 878
Target Start/End: Complemental strand, 31717684 - 31717441
Alignment:
Q  631 tattgtttacctttcaaatacagttccttctatgcttgcattctccacaaattgaagagtacttgcttgattttttgctttaaattcttcaataatattt 730  Q
    |||||| ||||||| ||| ||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||| |||    
T  31717684 tattgtatacctttgaaaaacagttccttctatatgtgcattctccacaaattgaagagtacttgcctgattttttgcctttaattcttcaagaatgttt 31717585  T
Q  731 ttgtcctatcataaataaaaaagaatagccaaacttgtaaacaatccaaagaaaaaggaaattggaattaatgtgttgtacgcttcagaagtcgtcaact 830  Q
    |||||||||||| || ||||| ||| ||||||||||| |||||||| | ||||||| |||| ||||||    |||||||||   ||| ||||| ||||||    
T  31717584 ttgtcctatcatcaagaaaaa-gaacagccaaacttggaaacaatcgatagaaaaaagaaactggaat----gtgttgtacttgtcacaagtcttcaact 31717490  T
Q  831 gttc-tcaaaattttatgaatatctttcagaatgttcaacatatgcata 878  Q
     ||  ||||||||| || |||||| |||| |||||| ||||||||||||    
T  31717489 ttttatcaaaatttcattaatatcgttcaaaatgtttaacatatgcata 31717441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 31701517 - 31701453
Alignment:
Q  355 atgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcagg 419  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  31701517 atgattttgcatgacaatacaatctgtactcaacttctttaacaagtctggaggaaatctgcagg 31701453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 31690247 - 31690168
Alignment:
Q  339 tatatttactcacaacatgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcag 418  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  31690247 tatatgtactcacacgatgattttgcatgacaagacaatctgtactcagcttctttaataaatctggaggaaatctgcag 31690168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 345 - 419
Target Start/End: Complemental strand, 31683157 - 31683083
Alignment:
Q  345 tactcacaacatgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcagg 419  Q
    ||||||||  |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  31683157 tactcacacgatgattttgcatgataagacaatctgtactcaacttctttaacaagtctggaggaaacctgcagg 31683083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 31684036 - 31683833
Alignment:
Q  23 ctcataagataacatatcattgaataccttgtcttcttggtcattgcaagttgtcaagatctcgaaaaaactagataattttttattaccacggaaattt 122  Q
    |||||| || |||||| |||||||||||||||  ||||  ||||||||||||||||||||||| |||||||| | |||||||||||| ||  |||  |||    
T  31684036 ctcatatgagaacataacattgaataccttgttatcttcatcattgcaagttgtcaagatctcaaaaaaactggctaattttttattgcccaggagcttt 31683937  T
Q  123 gttggtgatatgccttgctgtcat----gaaatcagatataacgaaacaatttaccgaacttcaaacatgtatatctgataaacttcattaaaatttgtt 218  Q
    | ||| || ||||| | |||||||     |||| ||||||||  ||||| | |||  || |||||||||||| || | |||||||||||| || ||||||    
T  31683936 gctggggagatgccatactgtcattaccaaaattagatataa--aaacattgtactaaatttcaaacatgtacatattataaacttcattgaactttgtt 31683839  T
Q  219 tttcaa 224  Q
    ||||||    
T  31683838 tttcaa 31683833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 632 - 771
Target Start/End: Complemental strand, 31682273 - 31682137
Alignment:
Q  632 attgtttacctttcaaatacagttccttctatgcttgcattctccacaaattgaagagtacttgcttgattttttgctttaaattcttcaataatatttt 731  Q
    ||||||||||| | |||||||| |||||||||    ||||||| ||||||||||||  ||||||| |||||| ||||  |||||||||||| |||||| |    
T  31682273 attgtttacctctgaaatacagatccttctatataggcattcttcacaaattgaaggctacttgcctgatttcttgcactaaattcttcaagaatattat 31682174  T
Q  732 tgtcctatcataaataaaaaagaatagccaaacttgtaaa 771  Q
    |||||||| || || ||||   || |||||||||||||||    
T  31682173 tgtcctatgatcaagaaaa---aaaagccaaacttgtaaa 31682137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 637 - 771
Target Start/End: Complemental strand, 31689704 - 31689572
Alignment:
Q  637 ttacctttcaaatacagttccttctatgcttgcattctccacaaattgaagagtacttgcttgattttttgctttaaattcttcaataatatttttgtcc 736  Q
    |||||||| |||||||| |||||||||  | | ||||||||||||||||||  ||||||| ||| || ||||  |||||||||||| |||||  ||||||    
T  31689704 ttacctttgaaatacagatccttctattttcgtattctccacaaattgaaggctacttgcctgacttcttgcactaaattcttcaagaatatcattgtcc 31689605  T
Q  737 tatcataaataaaaaagaatagccaaacttgtaaa 771  Q
    |||||| || | |||  || |||||||||||||||    
T  31689604 tatcatcaagagaaa--aacagccaaacttgtaaa 31689572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 31691478 - 31691406
Alignment:
Q  33 aacatatcattgaataccttgtcttcttggtcattgcaagttgtcaagatctcgaaaaaactagataattttt 105  Q
    ||||||||||||| |||||| || ||||  ||   |||| |||||||||||||||||||||||||||| ||||    
T  31691478 aacatatcattgagtaccttatcatcttcatcggagcaaattgtcaagatctcgaaaaaactagataactttt 31691406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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