View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18814_low_5 (Length: 271)
Name: NF18814_low_5
Description: NF18814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18814_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 3629342 - 3629589
Alignment:
| Q |
20 |
agagggttcttcgattaatgaagctagttctgttgccaacgtgtgttgagaatgatgtttacctgnnnnnnngaatatgatagttgagtgtttttgttag |
119 |
Q |
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| T |
3629342 |
agagggttcttcgattaatgaagctagttctgttgccaacgtgtgttgagaatgatgtttacctgaaaaaaagaatatgatagctgagtgtttttgttag |
3629441 |
T |
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| Q |
120 |
tgttgtgatttataaggggaaatgctaagtaaagtgtgtacctggaaaggagaaaggagaggtgaatctgaggaaggaga------------atttgagg |
207 |
Q |
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| T |
3629442 |
tgttgtgatttataaggggaaatgctaagtaaagtgtgtacctggaaaggagaaaggagaagtgaatctgaggaaggagaaagagtgaagtgatttgagg |
3629541 |
T |
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| Q |
208 |
aaatttgaagtggtggtgagtttggccattgttggaatagattctgtg |
255 |
Q |
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| T |
3629542 |
aaatttgaagtggtggtgagtttggccattgttggaatagattatgtg |
3629589 |
T |
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