View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18814_low_6 (Length: 251)
Name: NF18814_low_6
Description: NF18814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18814_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 48569005 - 48569090
Alignment:
| Q |
24 |
gctccgagcgggaaacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
109 |
Q |
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| T |
48569005 |
gctccgagcgggaaacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 48569141 - 48569201
Alignment:
| Q |
168 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct |
228 |
Q |
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| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct |
48569201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 10822265 - 10822202
Alignment:
| Q |
39 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
102 |
Q |
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| T |
10822265 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 36145131 - 36145194
Alignment:
| Q |
39 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
102 |
Q |
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| T |
36145131 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 10821937 - 10821885
Alignment:
| Q |
174 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatac |
226 |
Q |
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| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatac |
10821885 |
T |
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