View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18814_low_7 (Length: 245)

Name: NF18814_low_7
Description: NF18814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18814_low_7
NF18814_low_7
[»] scaffold0091 (3 HSPs)
scaffold0091 (1-100)||(29057-29157)
scaffold0091 (163-240)||(28917-28994)
scaffold0091 (178-240)||(24720-24782)
[»] chr6 (4 HSPs)
chr6 (1-100)||(14989390-14989490)
chr6 (1-98)||(14980278-14980376)
chr6 (176-240)||(14980458-14980522)
chr6 (63-100)||(10906902-10906939)
[»] scaffold0218 (2 HSPs)
scaffold0218 (1-99)||(14378-14477)
scaffold0218 (163-240)||(14237-14314)
[»] chr3 (9 HSPs)
chr3 (1-97)||(16642300-16642397)
chr3 (1-98)||(4712815-4712913)
chr3 (6-100)||(14062798-14062893)
chr3 (7-100)||(14055058-14055152)
chr3 (1-96)||(13926863-13926960)
chr3 (176-240)||(16642133-16642197)
chr3 (176-240)||(4712995-4713059)
chr3 (176-240)||(14062981-14063045)
chr3 (177-240)||(14055221-14055284)
[»] chr1 (5 HSPs)
chr1 (1-100)||(13882251-13882351)
chr1 (1-100)||(51658677-51658777)
chr1 (176-240)||(13882462-13882526)
chr1 (179-237)||(51658854-51658912)
chr1 (11-85)||(1567090-1567166)
[»] chr7 (9 HSPs)
chr7 (7-100)||(48376787-48376881)
chr7 (7-100)||(16060512-16060606)
chr7 (163-240)||(16060374-16060449)
chr7 (1-100)||(4531764-4531865)
chr7 (177-240)||(9080206-9080269)
chr7 (188-240)||(16069015-16069067)
chr7 (188-240)||(48376637-48376689)
chr7 (63-100)||(9080338-9080375)
chr7 (68-100)||(37946032-37946064)
[»] scaffold0003 (2 HSPs)
scaffold0003 (26-100)||(130795-130870)
scaffold0003 (176-240)||(130633-130697)
[»] chr8 (6 HSPs)
chr8 (1-100)||(23658526-23658634)
chr8 (38-100)||(23657751-23657814)
chr8 (189-240)||(23657648-23657699)
chr8 (189-240)||(23658423-23658474)
chr8 (1-43)||(23657827-23657869)
chr8 (188-240)||(17862251-17862303)
[»] scaffold1269 (1 HSPs)
scaffold1269 (6-77)||(1-73)
[»] scaffold0063 (2 HSPs)
scaffold0063 (163-240)||(28443-28518)
scaffold0063 (62-100)||(28342-28380)
[»] chr2 (2 HSPs)
chr2 (1-100)||(23656475-23656576)
chr2 (188-239)||(23907788-23907839)
[»] scaffold0061 (1 HSPs)
scaffold0061 (176-235)||(18097-18156)
[»] scaffold0319 (1 HSPs)
scaffold0319 (1-54)||(13585-13638)
[»] scaffold1043 (1 HSPs)
scaffold1043 (188-240)||(1432-1484)
[»] chr5 (3 HSPs)
chr5 (188-240)||(25756788-25756840)
chr5 (188-240)||(25790961-25791013)
chr5 (193-237)||(24832209-24832253)
[»] chr4 (2 HSPs)
chr4 (10-79)||(3576240-3576311)
chr4 (193-240)||(19728457-19728504)


Alignment Details
Target: scaffold0091 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 29157 - 29057
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatga 99  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29157 gaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 29058  T
Q  100 g 100  Q
    |    
T  29057 g 29057  T

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Target: scaffold0091; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 28994 - 28917
Alignment:
Q  163 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 28917  T

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Target: scaffold0091; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 24782 - 24720
Alignment:
Q  178 atatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 24720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14989390 - 14989490
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatga 99  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14989390 gaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 14989489  T
Q  100 g 100  Q
    |    
T  14989490 g 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 14980278 - 14980376
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatg 98  Q
    |||| ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14980278 gaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 14980376  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 14980458 - 14980522
Alignment:
Q  176 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14980458 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 14980522  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  63 atgagaaatgataatgtttatatgttagtgatgatgag 100  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

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Target: scaffold0218 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 14477 - 14378
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatga 99  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14477 gaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 14378  T

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Target: scaffold0218; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 14314 - 14237
Alignment:
Q  163 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||  |||||| ||||    
T  14314 gggtggtgtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtc 14237  T

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Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16642397 - 16642300
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttatatgttagtgatgat 97  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16642397 gaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgat 16642300  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 4712815 - 4712913
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatg 98  Q
    |||| ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4712815 gaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 4712913  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 14062798 - 14062893
Alignment:
Q  6 cataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  14062798 cataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagttatgatgag 14062893  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 14055058 - 14055152
Alignment:
Q  7 ataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 100  Q
    |||||| |||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  14055058 ataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgataatgag 14055152  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 13926863 - 13926960
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatga 96  Q
    |||| |||||||||| ||||||||||||| |  ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  13926863 gaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtgatga 13926960  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 16642197 - 16642133
Alignment:
Q  176 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16642197 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16642133  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 4712995 - 4713059
Alignment:
Q  176 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  4712995 atatatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtc 4713059  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 14062981 - 14063045
Alignment:
Q  176 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    ||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14062981 atatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 14063045  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 14055221 - 14055284
Alignment:
Q  177 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||||| ||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  14055221 tatatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtc 14055284  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 13882251 - 13882351
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatga 99  Q
    |||| |||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13882251 gaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 13882350  T
Q  100 g 100  Q
    |    
T  13882351 g 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 51658677 - 51658777
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttatatgttagtgatgatga 99  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  51658677 gaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttatatgttagtgatgatga 51658776  T
Q  100 g 100  Q
    |    
T  51658777 g 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 13882462 - 13882526
Alignment:
Q  176 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    ||||||| |||  ||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  13882462 atatatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 13882526  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 51658854 - 51658912
Alignment:
Q  179 tatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgat 237  Q
    |||| ||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgat 51658912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 1567090 - 1567166
Alignment:
Q  11 tgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatat 85  Q
    |||||| ||||||||||||||  ||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||    
T  1567090 tgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 48376881 - 48376787
Alignment:
Q  7 ataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  48376881 ataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttattgatgatgag 48376787  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 16060606 - 16060512
Alignment:
Q  7 ataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 100  Q
    ||||||||| || |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  16060606 ataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttatatgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 16060449 - 16060374
Alignment:
Q  163 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16060449 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16060374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4531764 - 4531865
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 98  Q
    |||| |||||||||||||||||||||||| |  ||||||||||| |||| ||| ||||||||| ||||||||| |||||| |||||| ||| ||||||||    
T  4531764 gaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattgatgatg 4531863  T
Q  99 ag 100  Q
    ||    
T  4531864 ag 4531865  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 9080269 - 9080206
Alignment:
Q  177 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9080269 tatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 9080206  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 16069015 - 16069067
Alignment:
Q  188 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  16069015 tgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtc 16069067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 48376689 - 48376637
Alignment:
Q  188 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtc 48376637  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  63 atgagaaatgataatgtttatatgttagtgatgatgag 100  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 37946032 - 37946064
Alignment:
Q  68 aaatgataatgtttatatgttagtgatgatgag 100  Q
    |||||||||||||||||| ||||||||||||||    
T  37946032 aaatgataatgtttatattttagtgatgatgag 37946064  T

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Target: scaffold0003 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 130870 - 130795
Alignment:
Q  26 tgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 100  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

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Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 130697 - 130633
Alignment:
Q  176 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  130697 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 130633  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 23658634 - 23658526
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatatacat--------gtaattaa-taaatacgatgagaaatgataatgtttatatgttagt 91  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||        |||||||| ||||||||||||||||| |||||||||||||||||||    
T  23658634 gaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattataatgtttatatgttagt 23658535  T
Q  92 gatgatgag 100  Q
    |||||||||    
T  23658534 gatgatgag 23658526  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 23657814 - 23657751
Alignment:
Q  38 tatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 100  Q
    |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  23657814 tatatatatgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag 23657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 23657699 - 23657648
Alignment:
Q  189 gactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 23657648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 23658474 - 23658423
Alignment:
Q  189 gactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtc 23658423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23657869 - 23657827
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatata 43  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  23657869 gaatccataatgtgacgaagagtgatgacgaagatattatata 23657827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 17862251 - 17862303
Alignment:
Q  188 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||| ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  17862251 tgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtc 17862303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 73 - 1
Alignment:
Q  6 cataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataat 77  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  73 cataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 28443 - 28518
Alignment:
Q  163 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  28443 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtc 28518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  62 gatgagaaatgataatgtttatatgttagtgatgatgag 100  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 23656475 - 23656576
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatg 98  Q
    |||| ||||||||||||||||||||||||||  ||||||||||| ||| || ||| ||||||| ||||||||||||||| ||||||| ||| |||| |||    
T  23656475 gaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatgataatg 23656574  T
Q  99 ag 100  Q
    ||    
T  23656575 ag 23656576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 23907839 - 23907788
Alignment:
Q  188 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgt 239  Q
    |||| |||||||||| |||||||| |||||||||| | ||||||||||||||    
T  23907839 tgacgatgagaatgatgacgtatatttatgatgataatttgaatgatgatgt 23907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 18097 - 18156
Alignment:
Q  176 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatg 235  Q
    ||||||| ||| ||||||||||||||| || |||| ||||||||||||||||||||||||    
T  18097 atatatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatg 18156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13585 - 13638
Alignment:
Q  1 gaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa 54  Q
    |||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  13585 gaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaa 13638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 1432 - 1484
Alignment:
Q  188 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||| ||||||||||  |||||||||||||||||||| |||||||||||||||    
T  1432 tgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtc 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 25756788 - 25756840
Alignment:
Q  188 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25756788 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25756840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 25791013 - 25790961
Alignment:
Q  188 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25791013 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 24832209 - 24832253
Alignment:
Q  193 atgagaatgaagacgtataattatgatgatgacttgaatgatgat 237  Q
    |||||||||| || |||||||||||||||||| ||||||||||||    
T  24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgat 24832253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  10 atgtgacgaagagtgatgacga-agatattatatacatgta-attaataaatacgatgagaaatgataatgt 79  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| || |||||||||||||||| ||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 19728457 - 19728504
Alignment:
Q  193 atgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 240  Q
    ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  19728457 atgagaatgataaagtataattatgatgatgatttgaatgatgatgtc 19728504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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