View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18815_low_2 (Length: 579)
Name: NF18815_low_2
Description: NF18815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18815_low_2 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 19 - 579
Target Start/End: Complemental strand, 5618387 - 5617824
Alignment:
| Q |
19 |
gttagaagtagaagttcacgatgatctaattggtactaatttgaagaaacagttataatagaaaattaaacgggtgtcttaagagaatttgatgcttgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5618387 |
gttagaagtagaagttcacgatgatctaattggtactaatttgaagaaacagttataatagaaaattaaacgggtgtcttaagagaatttgatgcttgtg |
5618288 |
T |
|
| Q |
119 |
gacatcgttgcagaatggctaagtgctgtttatataacttagcaattctaacaggtttctgcaatttaactttagtgaaaacagtggtcatggattccat |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5618287 |
gacatcgttgcagaatggctaggtgctgtttatataacttagcaattctaacaggtttctgcaatttaactttagtgaaaacagtggtcatggattccat |
5618188 |
T |
|
| Q |
219 |
gaattat---aatgcttgatattttccaccaagttcggaaattataaccatccaaagtatagcacgttagctttcgttgtttccacgaataaaaagcctc |
315 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5618187 |
gaattattataatgcttgatattttccaccaagttcggaaattataaccatccaaagtatagcacgtcagctttcgttgtttccacgaataaaaagcctc |
5618088 |
T |
|
| Q |
316 |
gtactaaatagcaacgctgcaatagttaatgcgaaatgttaacgagtgccccagggcactctttaagcgctggaccagtggagaaagaagaattataatg |
415 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
5618087 |
gtactaaatagcaacgctgcaatagttaatgggaaatgttaacgagttccccaaggcactctttaagcactggactagtggagaaagaagaattataatg |
5617988 |
T |
|
| Q |
416 |
accatcctaaacctaaaaagccacaacctacataagtaaataaaatgttgctactcatacatagtgtgaaaaatggtcaagaaggtaaccaagcagaagc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5617987 |
accatcctaaacctaaaaagccacaacctacataagtaaataaaatgttgctactcatacatagtgtgaaaaatggtcaagaaggtaaccaagcagaagc |
5617888 |
T |
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| Q |
516 |
aaatataacattatgccctttccaagtaagcacaagaaattcatcttctttcttcaatccccat |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
5617887 |
aaatataacattatgccctttccaagtaagcacaagaaactcgtcttctttcttcaatccccat |
5617824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 34899103 - 34899136
Alignment:
| Q |
348 |
gaaatgttaacgagtgccccagggcactctttaa |
381 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
34899103 |
gaaatgttaacgagtgcaccagggcactctttaa |
34899136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 19 - 579
Target Start/End: Complemental strand, 21163674 - 21163111
Alignment:
| Q |
19 |
gttagaagtagaagttcacgatgatctaattggtactaatttgaagaaacagttataatagaaaattaaacgggtgtcttaagagaatttgatgcttgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21163674 |
gttagaagtagaagttcacgatgatctaattggtactaatttgaagaaacagttataatagaaaattaaacgggtgtcttaagagaatttgatgcttgtg |
21163575 |
T |
|
| Q |
119 |
gacatcgttgcagaatggctaagtgctgtttatataacttagcaattctaacaggtttctgcaatttaactttagtgaaaacagtggtcatggattccat |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21163574 |
gacatcgttgcagaatggctaggtgctgtttatataacttagcaattctaacaggtttctgcaatttaactttagtgaaaacagtggtcatggattccat |
21163475 |
T |
|
| Q |
219 |
gaattat---aatgcttgatattttccaccaagttcggaaattataaccatccaaagtatagcacgttagctttcgttgtttccacgaataaaaagcctc |
315 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21163474 |
gaattattataatgcttgatattttccaccaagttcggaaattataaccatccaaagtatagcacgtcagctttcgttgtttccacgaataaaaagcctc |
21163375 |
T |
|
| Q |
316 |
gtactaaatagcaacgctgcaatagttaatgcgaaatgttaacgagtgccccagggcactctttaagcgctggaccagtggagaaagaagaattataatg |
415 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
21163374 |
gtactaaatagcaacgctgcaatagttaatgggaaatgttaacgagttccccaaggcactctttaagcactggactagtggagaaagaagaattataatg |
21163275 |
T |
|
| Q |
416 |
accatcctaaacctaaaaagccacaacctacataagtaaataaaatgttgctactcatacatagtgtgaaaaatggtcaagaaggtaaccaagcagaagc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21163274 |
accatcctaaacctaaaaagccacaacctacataagtaaataaaatgttgctactcatacatagtgtgaaaaatggtcaagaaggtaaccaagcagaagc |
21163175 |
T |
|
| Q |
516 |
aaatataacattatgccctttccaagtaagcacaagaaattcatcttctttcttcaatccccat |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
21163174 |
aaatataacattatgccctttccaagtaagcacaagaaactcgtcttctttcttcaatccccat |
21163111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 498 - 579
Target Start/End: Original strand, 39823512 - 39823593
Alignment:
| Q |
498 |
aggtaaccaagcagaagcaaatataacattatgccctttccaagtaagcacaagaaattcatcttctttcttcaatccccat |
579 |
Q |
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||||||||||||||||||||| | ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
39823512 |
aggtaaccaagcagaagcaaaaacaacattatggcctttccaagtaagcacaatatgctcatcttctttcttcaatccccat |
39823593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 383
Target Start/End: Complemental strand, 35731426 - 35731391
Alignment:
| Q |
348 |
gaaatgttaacgagtgccccagggcactctttaagc |
383 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
35731426 |
gaaatgttaacgagtgcccccgggcactctttaagc |
35731391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 382
Target Start/End: Complemental strand, 18049574 - 18049540
Alignment:
| Q |
348 |
gaaatgttaacgagtgccccagggcactctttaag |
382 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
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| T |
18049574 |
gaaatgttaacgagtgccccggggcactctttaag |
18049540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 382
Target Start/End: Complemental strand, 25280066 - 25280032
Alignment:
| Q |
348 |
gaaatgttaacgagtgccccagggcactctttaag |
382 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
25280066 |
gaaatgttaacgagtgcccctgggcactctttaag |
25280032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 381
Target Start/End: Complemental strand, 31844349 - 31844320
Alignment:
| Q |
352 |
tgttaacgagtgccccagggcactctttaa |
381 |
Q |
| |
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|||||||||||||||||||||||||||||| |
|
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| T |
31844349 |
tgttaacgagtgccccagggcactctttaa |
31844320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 382
Target Start/End: Complemental strand, 38786346 - 38786312
Alignment:
| Q |
348 |
gaaatgttaacgagtgccccagggcactctttaag |
382 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38786346 |
gaaatgttaacgagtgccctagggcactctttaag |
38786312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 382
Target Start/End: Complemental strand, 35022744 - 35022711
Alignment:
| Q |
349 |
aaatgttaacgagtgccccagggcactctttaag |
382 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
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|
| T |
35022744 |
aaatgttaacgagtgtcccagggcactctttaag |
35022711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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