View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18815_low_3 (Length: 330)
Name: NF18815_low_3
Description: NF18815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18815_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 2 - 311
Target Start/End: Complemental strand, 2122493 - 2122183
Alignment:
| Q |
2 |
acggagtgtctatgttatttatgttgatttcctnnnnnnnn-cagttattcaatgatgggatgctgagacatattctacttcaactatgaagaactgatg |
100 |
Q |
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| T |
2122493 |
acggagtgtctatgttatttatgttgatttccttaaaaaaaacagttattcgatgatgggatgctgagacatattctacttcaactatgaagaactgatt |
2122394 |
T |
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| Q |
101 |
attaaggtactatataacaagatatcatcaaagaataaaataatgaaattccttagaaaaggtttgaacatggtgttcatagttacttgaaatgtagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2122393 |
attaaggtactatataacaagatatcatcaaagaataaaataatgaaattccttagaaaaggtttgaacatggtgttcatagttacttgaaatgaagaag |
2122294 |
T |
|
| Q |
201 |
gtgtgttgcaaagccaaaagatactaacctaacattcatagtgaccttggtgggtgcgagaaaaagacttgttaataccgttcatgcatcatgatttgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
2122293 |
gtgtgttgcaaagccaaaagatactaacctaacattcatagtgaccttggtgggtgcgagaaaaagacttgttaataccgttcatacatcatgatctgat |
2122194 |
T |
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| Q |
301 |
gatacctttga |
311 |
Q |
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|||||| |||| |
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| T |
2122193 |
gataccgttga |
2122183 |
T |
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