View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18815_low_4 (Length: 294)

Name: NF18815_low_4
Description: NF18815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18815_low_4
NF18815_low_4
[»] chr6 (3 HSPs)
chr6 (19-289)||(27853712-27853982)
chr6 (71-232)||(24894648-24894809)
chr6 (104-256)||(12646941-12647093)
[»] chr7 (4 HSPs)
chr7 (102-232)||(23208709-23208839)
chr7 (71-226)||(27782442-27782597)
chr7 (80-178)||(1579983-1580081)
chr7 (190-235)||(27153005-27153050)
[»] chr1 (5 HSPs)
chr1 (105-232)||(5193897-5194023)
chr1 (105-217)||(43297565-43297677)
chr1 (77-220)||(50237380-50237523)
chr1 (110-223)||(50451084-50451197)
chr1 (110-235)||(20284026-20284151)
[»] chr3 (9 HSPs)
chr3 (132-232)||(38648052-38648152)
chr3 (105-232)||(23423678-23423805)
chr3 (80-226)||(55025620-55025766)
chr3 (112-257)||(26433545-26433690)
chr3 (71-226)||(11890555-11890710)
chr3 (110-232)||(11896328-11896450)
chr3 (74-242)||(17719170-17719338)
chr3 (74-242)||(19020399-19020567)
chr3 (74-226)||(53609112-53609264)
[»] scaffold0214 (1 HSPs)
scaffold0214 (80-226)||(8147-8293)
[»] chr4 (4 HSPs)
chr4 (72-238)||(14306955-14307121)
chr4 (72-238)||(14290906-14291072)
chr4 (105-217)||(46785318-46785430)
chr4 (81-232)||(7588448-7588599)
[»] chr2 (6 HSPs)
chr2 (93-235)||(570175-570317)
chr2 (110-257)||(14654525-14654672)
chr2 (71-226)||(26790502-26790657)
chr2 (165-232)||(176671-176738)
chr2 (102-229)||(35136059-35136186)
chr2 (102-229)||(40327358-40327485)
[»] scaffold0036 (1 HSPs)
scaffold0036 (105-229)||(68038-68162)
[»] chr5 (2 HSPs)
chr5 (74-242)||(23944185-23944353)
chr5 (90-229)||(7813007-7813146)
[»] chr8 (5 HSPs)
chr8 (110-232)||(23133430-23133552)
chr8 (102-263)||(38347617-38347778)
chr8 (192-242)||(10711424-10711474)
chr8 (110-238)||(26972626-26972754)
chr8 (190-238)||(14759081-14759129)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 27853712 - 27853982
Alignment:
Q  19 aaagatttttaaagtaacgttgagcctcattttgaagaatggagtcgtcattagaccaaataccattgggaagctgaagctagtgaattctatttctctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27853712 aaagatttttaaagtaacgttgagcctcattttgaagaatggagtcgtcattagaccaaataccattgggaagctgaagctagtgaattctatttctctt 27853811  T
Q  119 tcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaatgcatttcttcttgg 218  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27853812 tcttctgatgatggtttgagcatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctagatttttgataccaatgcatttcttcttgg 27853911  T
Q  219 aaaagaatgtgattatactcatttcgaagctgtttttcaggaaggacattgtagatagagtcaactctatc 289  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||||||    
T  27853912 aaaagaatgtgattatactcattttgaagctgtttttcaagaaggacatggtggatagagtcaactctatc 27853982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 24894648 - 24894809
Alignment:
Q  71 agaccaaataccattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaat 170  Q
    ||||||||| ||||| || ||||||||    || |||||||||||||||||||| ||||| ||||||| |||||| |  ||||||||| | |||||||||    
T  24894648 agaccaaatgccattagggagctgaagtcgatggattctatttctctttcttcttatgatagtttgagcatgaaaaagtgagctatttttgtcgccaaat 24894747  T
Q  171 ttgacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaatgtgatt 232  Q
    || ||||| ||||| ||  ||||||| |||||  |||||||||||||||| || ||||||||    
T  24894748 ttaacccattgttctctggatttttggtaccatagcatttcttcttggaataggatgtgatt 24894809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 256
Target Start/End: Original strand, 12646941 - 12647093
Alignment:
Q  104 aattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaa 203  Q
    |||||| ||||| || |||| |||||| ||||| |  || ||||| ||||| |||| ||| |||||||| ||||  | ||| ||| ||||||| ||||||    
T  12646941 aattctgtttcttttccttcggatgattgtttgggcgtggaagaaggagctgtttcaatcaccaaatttaaccctattttctctagatttttggtaccaa 12647040  T
Q  204 tgcatttcttcttggaaaagaatgtgattatactcatttcgaagctgtttttc 256  Q
    |||||||||||||| ||||| ||||| |||||||||  | |||||| ||||||    
T  12647041 tgcatttcttcttgaaaaaggatgtggttatactcacgttgaagctctttttc 12647093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 23208709 - 23208839
Alignment:
Q  102 tgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgatacc 201  Q
    |||||||||||||||||||| || ||||| ||||||| |||||| || ||||||||| | ||||||||||| ||||| ||||| ||  ||||||| ||||    
T  23208709 tgaattctatttctctttctccttatgatagtttgagcatgaaaaaatgagctatttttgtcgccaaatttaacccattgttctctggatttttggtacc 23208808  T
Q  202 aatgcatttcttcttggaaaagaatgtgatt 232  Q
    || ||||||||||||||||||| ||||||||    
T  23208809 aaagcatttcttcttggaaaaggatgtgatt 23208839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 27782442 - 27782597
Alignment:
Q  71 agaccaaataccattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaat 170  Q
    ||||||| ||||||| ||||| ||||||  ||||||||| ||| |||| ||||||||||| ||||| | |||||| || ||||||||| | || ||||||    
T  27782442 agaccaattaccattaggaagttgaagcatgtgaattctgtttttcttccttctgatgattgtttgggcatgaaaaaatgagctatttttgtctccaaat 27782541  T
Q  171 ttgacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaat 226  Q
    || ||||| | ||| ||  |||||||||||||| ||||||| ||||||||||||||    
T  27782542 ttcacccaattttctctggatttttgataccaaagcatttcctcttggaaaagaat 27782597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 1579983 - 1580081
Alignment:
Q  80 accattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgaccca 178  Q
    |||||||||||| ||||| |  |||||||||||  | |||||||  ||||||||||||| ||| |||||||| |||||| | || |||||||| |||||    
T  1579983 accattgggaagttgaaggttatgaattctattcttgtttcttccaatgatggtttgagaatggaagaaagaactatttttgtcaccaaatttcaccca 1580081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 27153050 - 27153005
Alignment:
Q  190 atttttgataccaatgcatttcttcttggaaaagaatgtgattata 235  Q
    ||||||| ||||||| |||||||||||| || ||||||||||||||    
T  27153050 atttttggtaccaattcatttcttcttgaaagagaatgtgattata 27153005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 5193897 - 5194023
Alignment:
Q  105 attctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaat 204  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||||| || || | || |||||||||||||| || || ||  |||||||||||||      
T  5193897 attctatttctcttccttctgatgatagtttgagcatgaaagaaagaggtaattttgtcaccaaatttgacccattg-tctcttgatttttgataccaga 5193995  T
Q  205 gcatttcttcttggaaaagaatgtgatt 232  Q
    |||||||||||||||| |||||||||||    
T  5193996 gcatttcttcttggaagagaatgtgatt 5194023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 43297677 - 43297565
Alignment:
Q  105 attctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaat 204  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||| ||||| | || |||||||| ||||| || |||||  ||||||||||||||     
T  43297677 attctatttctctttcttctgatgatagtttgggcatgaaagaaagaggtatttttgtcaccaaatttaacccattgctcccttgatttttgataccaaa 43297578  T
Q  205 gcatttcttcttg 217  Q
    ||||||| |||||    
T  43297577 gcatttcatcttg 43297565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 50237380 - 50237523
Alignment:
Q  77 aataccattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacc 176  Q
    ||||||||| ||||| || |||   |||||| | |||||||||||||| ||||| ||||||| ||| || |||||| | |||||||| ||||||||||||    
T  50237380 aataccatttggaagttggagcctatgaattatgtttctctttcttctaatgatagtttgagcatggaaaaaagagttgtttctatctccaaatttgacc 50237479  T
Q  177 cagtgttccctatatttttgataccaatgcatttcttcttggaa 220  Q
    || ||||||||  | ||||| |||||| ||||||||||||||||    
T  50237480 cattgttccctggacttttggtaccaaagcatttcttcttggaa 50237523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 50451197 - 50451084
Alignment:
Q  110 atttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaatgcatt 209  Q
    ||||||||| ||||| ||||| ||||||| ||| || || ||||||||| | ||||||||||| ||||| || || ||| |||||||||||||| |||||    
T  50451197 atttctcttccttcttatgatcgtttgagcatggaaaaatgagctatttttgtcgccaaatttaacccattgctctctagatttttgataccaaagcatt 50451098  T
Q  210 tcttcttggaaaag 223  Q
    ||||||||||||||    
T  50451097 tcttcttggaaaag 50451084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 20284151 - 20284026
Alignment:
Q  110 atttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaatgcatt 209  Q
    ||||||||||||||| |  ||||||||||| || |||||||   | ||| |||| |||||||| ||||| | ||| ||  |||||||||||||| |||||    
T  20284151 atttctctttcttctaactatggtttgagtgtggaagaaagcagtgtttttatctccaaatttcacccatttttctcttgatttttgataccaaagcatt 20284052  T
Q  210 tcttcttggaaaagaatgtgattata 235  Q
    ||||||||||| ||||| ||||||||    
T  20284051 tcttcttggaatagaatatgattata 20284026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 132 - 232
Target Start/End: Original strand, 38648052 - 38648152
Alignment:
Q  132 gtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaatgtgat 231  Q
    ||||||| ||||||||||||||||||| | || |||||||| ||||| || |||||| |||||||||||||| ||||||||||||| ||||| |||||||    
T  38648052 gtttgagcatgaaagaaagagctatttttgtcaccaaatttaacccattgctccctagatttttgataccaaagcatttcttcttgaaaaaggatgtgat 38648151  T
Q  232 t 232  Q
    |    
T  38648152 t 38648152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 23423805 - 23423678
Alignment:
Q  105 attctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaat 204  Q
    |||||||||||||||||||| ||||| ||||||| |||||| |  ||||||||| | ||||||||||| ||||| ||||| ||  ||||||| |||||      
T  23423805 attctatttctctttcttcttatgatagtttgagcatgaaaaattgagctatttttgtcgccaaatttaacccattgttctctggatttttggtaccata 23423706  T
Q  205 gcatttcttcttggaaaagaatgtgatt 232  Q
    |||||||||||||||| || ||||||||    
T  23423705 gcatttcttcttggaataggatgtgatt 23423678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 55025620 - 55025766
Alignment:
Q  80 accattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccag 179  Q
    |||||| || ||||||||   ||| ||| ||||| ||||||||| |||||||||||| || |||||||||||||||||| |||| |||||||| |||||     
T  55025620 accattaggtagctgaaggctgtggattttatttttctttcttcggatgatggtttgtgtgtgaaagaaagagctatttttatctccaaatttaacccac 55025719  T
Q  180 tgttccctatatttttgataccaatgcatttcttcttggaaaagaat 226  Q
      ||| ||  ||||||||||||||  ||| |||||||||||||||||    
T  55025720 atttctctggatttttgataccaaatcatctcttcttggaaaagaat 55025766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 257
Target Start/End: Original strand, 26433545 - 26433690
Alignment:
Q  112 ttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaatgcatttc 211  Q
    ||||||||||||| || |||||||||||||| ||||||| | | ||| |||| ||||| || ||||| | ||| | | |||||||||||||| |||||||    
T  26433545 ttctctttcttctaattatggtttgagtatggaagaaagcggtgtttttatccccaaacttcacccatttttctcgagatttttgataccaaagcatttc 26433644  T
Q  212 ttcttggaaaagaatgtgattatactcatttcgaagctgtttttca 257  Q
    ||||||||| ||||| || ||||| || ||| |||||| |||||||    
T  26433645 ttcttggaagagaatatggttatattctttttgaagctctttttca 26433690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 11890555 - 11890710
Alignment:
Q  71 agaccaaataccattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaat 170  Q
    ||||||| ||||||| ||||| ||||||  ||||||| | ||| |||| ||||||||||| ||||| | |||||| || ||||||||| | || ||||||    
T  11890555 agaccaattaccattaggaagttgaagcatgtgaattatgtttttcttccttctgatgattgtttgggcatgaaaaaatgagctatttttgtctccaaat 11890654  T
Q  171 ttgacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaat 226  Q
    || || || | ||| ||  |||||||||||||| ||||||| ||||||||||||||    
T  11890655 ttcacgcaattttctctggatttttgataccaaagcatttcctcttggaaaagaat 11890710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 11896450 - 11896328
Alignment:
Q  110 atttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaatgcatt 209  Q
    ||||||||||||||| |  ||||||||||| || |||||||   | ||| |||| |||||||| ||||| | ||| ||  |||||||||||||| |||||    
T  11896450 atttctctttcttctaactatggtttgagtgtggaagaaagcagtgtttttatctccaaatttcacccatttttctcttgatttttgataccaaagcatt 11896351  T
Q  210 tcttcttggaaaagaatgtgatt 232  Q
    ||||||||||| ||||| |||||    
T  11896350 tcttcttggaatagaatatgatt 11896328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 17719170 - 17719338
Alignment:
Q  74 ccaaataccattgggaagctgaag-ctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaattt 172  Q
    ||||||||||||||| |||||||| ||| || | ||||||  |||||||||| ||||| ||||||| |||||||||||| || ||  |||| ||||| ||    
T  17719170 ccaaataccattggggagctgaagtcta-tggactctattcttctttcttctaatgatagtttgagcatgaaagaaagaactgttcttatcaccaaactt 17719268  T
Q  173 gacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaatgtgattatactcattt 242  Q
     | ||| | ||| ||| ||||||| |||||   |||||||||||| ||||| || ||||| |||||||||    
T  17719269 tatccatttttctctagatttttggtaccacaacatttcttcttgaaaaaggatatgattgtactcattt 17719338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 19020399 - 19020567
Alignment:
Q  74 ccaaataccattgggaagctgaag-ctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaattt 172  Q
    ||||||||||||||| |||||||| ||| || | ||||||  |||||||||| ||||| ||||||| |||||||||||| || ||  |||| ||||| ||    
T  19020399 ccaaataccattggggagctgaagtcta-tggactctattcttctttcttctaatgatagtttgagcatgaaagaaagaactgttcttatcaccaaactt 19020497  T
Q  173 gacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaatgtgattatactcattt 242  Q
     | ||| | ||| ||| ||||||| |||||   |||||||||||| ||||| || ||||| |||||||||    
T  19020498 tatccatttttctctagatttttggtaccacaacatttcttcttgaaaaaggatatgattgtactcattt 19020567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 226
Target Start/End: Original strand, 53609112 - 53609264
Alignment:
Q  74 ccaaataccattgggaagctgaag-ctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaattt 172  Q
    |||||| |||||||| |||||||| ||| |||||| ||||| |||||||||  ||||| | ||||| ||| |||||||| || ||| | || ||||| |     
T  53609112 ccaaatgccattggggagctgaagtcta-tgaattttatttttctttcttcgaatgatagcttgagcatggaagaaagaactgtttttgtcaccaaactg 53609210  T
Q  173 gacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaat 226  Q
    || ||| | ||| ||| | ||||| |||||| ||||||||||||| ||||||||    
T  53609211 gatccatttttctctagacttttggtaccaaagcatttcttcttgaaaaagaat 53609264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 226
Target Start/End: Complemental strand, 8293 - 8147
Alignment:
Q  80 accattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccag 179  Q
    |||||| |||||||| |||| ||| ||| | ||  |||||||||||||||||||||| || || || || | ||||||||| || |||||||| |||||     
T  8293 accattaggaagctggagcttgtggattttgttcttctttcttctgatgatggtttgtgtgtggaaaaaggcgctatttctgtcaccaaatttcacccat 8194  T
Q  180 tgttccctatatttttgataccaatgcatttcttcttggaaaagaat 226  Q
    |||||||   |||||||||||||||||||||| || || ||||||||    
T  8193 tgttcccgtgatttttgataccaatgcatttcctcctgaaaaagaat 8147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 14307121 - 14306955
Alignment:
Q  72 gaccaaataccattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatt 171  Q
    ||||| |||||||| || |||||||||   |||||| | ||||| |||||||||||||||||||| | |||||||||||   | ||  | || |||||||    
T  14307121 gaccagataccatttgggagctgaagcctatgaattttgtttctttttcttctgatgatggtttgggcatgaaagaaagcattgttcttgtccccaaatt 14307022  T
Q  172 tgacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaatgtgattatactc 238  Q
    | ||||| || |||||| ||||||||||||  ||||||||||||||||| || ||||  ||||||||    
T  14307021 taacccattgctccctagatttttgataccggtgcatttcttcttggaagaggatgtcgttatactc 14306955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 14291072 - 14290906
Alignment:
Q  72 gaccaaataccattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatt 171  Q
    ||||| ||| |||| || |||||||||   |||||| | ||||| |||||||||||||||||||| | |||||||||||   | ||  | || |||||||    
T  14291072 gaccagataacatttgggagctgaagcctatgaattttgtttctttttcttctgatgatggtttgggcatgaaagaaagcattgttcttgtccccaaatt 14290973  T
Q  172 tgacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaatgtgattatactc 238  Q
    | ||||| || |||||| ||||||||||||  ||||||||||||||||| || ||||  ||||||||    
T  14290972 taacccattgctccctagatttttgataccggtgcatttcttcttggaagaggatgtcgttatactc 14290906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 46785318 - 46785430
Alignment:
Q  105 attctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaat 204  Q
    ||||| ||||| |||||||| ||||||||||||| ||| || |||||| | ||| | || |||||||| ||||| |  |||||| |||||||||||||      
T  46785318 attctgtttctttttcttctaatgatggtttgagcatggaaaaaagagttgtttttgtcaccaaatttaacccaattctccctagatttttgataccata 46785417  T
Q  205 gcatttcttcttg 217  Q
     ||||||||||||    
T  46785418 acatttcttcttg 46785430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 7588448 - 7588599
Alignment:
Q  81 ccattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagt 180  Q
    ||||| ||||| ||||| | ||||||| |||||||||| || | ||| |||||||| || || ||||||||||| ||| | || ||||| || ||||| |    
T  7588448 ccattaggaagttgaaggttgtgaattttatttctcttcctacggattatggtttgggtgtggaagaaagagctgtttttgtcaccaaacttaacccact 7588547  T
Q  181 gttccctatatttttgataccaatgcatttcttcttggaaaagaatgtgatt 232  Q
     ||| ||  |||||||||||||| |||| ||||| || || ||||| |||||    
T  7588548 tttctctggatttttgataccaaagcatctcttcctgaaacagaatatgatt 7588599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 570317 - 570175
Alignment:
Q  93 tgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatt 192  Q
    ||||||| ||| |||||||||||||| ||||| || || ||||||| ||||||||| ||||||||| | || |||||||| ||||| || || ||  |||    
T  570317 tgaagcttgtggattctatttctcttccttctaataatagtttgagcatgaaagaatgagctatttttgtcaccaaattttacccattgctctcttgatt 570218  T
Q  193 tttgataccaatgcatttcttcttggaaaagaatgtgattata 235  Q
    | || |||||| |||| |||||||||||||| || ||||||||    
T  570217 tctggtaccaaagcatctcttcttggaaaaggatatgattata 570175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 257
Target Start/End: Original strand, 14654525 - 14654672
Alignment:
Q  110 atttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaatgcatt 209  Q
    ||||||||||||||| |  ||||||||||| || ||||||| | | ||| |||| |||||||| ||||| | ||| ||  ||||||| |||||| |||||    
T  14654525 atttctctttcttctaactatggtttgagtgtggaagaaagcggtgtttttatccccaaatttcacccatttttctcttgatttttggtaccaaagcatt 14654624  T
Q  210 tcttcttggaaaagaatgtgattatactcatttcgaagctgtttttca 257  Q
    ||||||||||||||||| ||||| || || ||| | |||| |||||||    
T  14654625 tcttcttggaaaagaatatgattgtattctttttggagctctttttca 14654672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 226
Target Start/End: Complemental strand, 26790657 - 26790502
Alignment:
Q  71 agaccaaataccattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaat 170  Q
    |||||||  |||||| |||||||| |||| ||| ||| | ||  |||||||||||||||||||||| || ||||| || ||||||||| | || ||||||    
T  26790657 agaccaagaaccattaggaagctggagcttgtgtattttgttcttctttcttctgatgatggtttgggtgtgaaaaaaggagctatttttgtcaccaaat 26790558  T
Q  171 ttgacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaat 226  Q
    || ||||| |||||||   ||||||||||| ||||||| || || || ||||||||    
T  26790557 ttcacccattgttcccgtgatttttgatactaatgcatctcctcctgaaaaagaat 26790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 176738 - 176671
Alignment:
Q  165 ccaaatttgacccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaatgtgatt 232  Q
    |||||||||||||| | ||||||  ||||||||||||||  |||||||||||||||||| ||||||||    
T  176738 ccaaatttgacccacttttcccttgatttttgataccaaaacatttcttcttggaaaagtatgtgatt 176671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 35136059 - 35136186
Alignment:
Q  102 tgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgatacc 201  Q
    |||||| | ||||| |||||||||||||| ||||| | |||||||||||   | ||| | || |||||||||| ||| | ||| ||| ||||||| ||||    
T  35136059 tgaattatgtttctttttcttctgatgatagtttgtgcatgaaagaaagccgtgtttttgtctccaaatttgatccacttttctctagatttttggtacc 35136158  T
Q  202 aatgcatttcttcttggaaaagaatgtg 229  Q
    || ||||||| ||||||||||| |||||    
T  35136159 aaagcatttcctcttggaaaaggatgtg 35136186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 40327485 - 40327358
Alignment:
Q  102 tgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgatacc 201  Q
    |||||||| ||||| |||||||||||||| ||||| | ||| |||||||   | ||| | || |||||||||| ||| | ||| ||| ||||||| ||||    
T  40327485 tgaattctgtttctttttcttctgatgatagtttgtgcatggaagaaagccgtgtttttgtctccaaatttgatccacttttctctagatttttggtacc 40327386  T
Q  202 aatgcatttcttcttggaaaagaatgtg 229  Q
    || ||||||| ||||||||||| |||||    
T  40327385 aaagcatttcctcttggaaaaggatgtg 40327358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 68162 - 68038
Alignment:
Q  105 attctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaat 204  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||||||   | ||| |||| |||||||||| ||| | |||  || ||||||| ||||||     
T  68162 attctatttctttttcttctgatgatagtttgagcatggaagaaagcagtgtttttatctccaaatttgatccacttttcaatagatttttggtaccaaa 68063  T
Q  205 gcatttcttcttggaaaagaatgtg 229  Q
    |||||||||||||||| || |||||    
T  68062 gcatttcttcttggaagaggatgtg 68038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 242
Target Start/End: Complemental strand, 23944353 - 23944185
Alignment:
Q  74 ccaaataccattgggaagctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttg 173  Q
    |||||||||||| || || ||||||   |||||||||||  |||||||||| ||||| ||||||| ||| |||||||| || ||  | || ||| ||||     
T  23944353 ccaaataccattagggagttgaagcctatgaattctattattctttcttctaatgattgtttgagcatggaagaaagaactgttcttgtcaccatattta 23944254  T
Q  174 acccagtgttccctatatttttgataccaatgcatttcttcttggaaaagaatgtgattatactcattt 242  Q
    | ||| | ||| ||| ||||||| || ||| ||||||||||||||||||| || ||||| |||||||||    
T  23944253 atccatttttctctagatttttggtagcaaagcatttcttcttggaaaaggatatgattgtactcattt 23944185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 229
Target Start/End: Complemental strand, 7813146 - 7813007
Alignment:
Q  90 agctgaagctagtgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctat 189  Q
    |||||||||  ||| |||||||||||||| ||||| ||||| ||||| | ||| || || |   | ||| |||| |||| ||||||||| |  || |||     
T  7813146 agctgaagccggtggattctatttctcttccttctaatgatagtttgggcatggaaaaatgcagtgtttttatctccaattttgacccacttatctctag 7813047  T
Q  190 atttttgataccaatgcatttcttcttggaaaagaatgtg 229  Q
    ||||||| |||||| ||||||||||||| |||||||||||    
T  7813046 atttttggtaccaaagcatttcttcttgaaaaagaatgtg 7813007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 23133430 - 23133552
Alignment:
Q  110 atttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaatgcatt 209  Q
    ||||||||||||||| |  ||||||||||| || |||||||   | ||| |||| |||||||| ||||| | ||| ||  |||||||||||||| |||||    
T  23133430 atttctctttcttctaactatggtttgagtgtggaagaaagcagtgtttttatctccaaatttcacccatttttctcttgatttttgataccaaagcatt 23133529  T
Q  210 tcttcttggaaaagaatgtgatt 232  Q
    ||||||||||| ||||| |||||    
T  23133530 tcttcttggaatagaatatgatt 23133552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 263
Target Start/End: Complemental strand, 38347778 - 38347617
Alignment:
Q  102 tgaattctatttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgatacc 201  Q
    |||||| ||||  |||||||||| ||||||||||| | ||||||||| ||  | ||| |||| |||||||||| ||| |  || |   ||||| | ||||    
T  38347778 tgaattatattattctttcttctaatgatggtttgggcatgaaagaaggatgtgtttttatctccaaatttgatccacttctcgcggaattttcggtacc 38347679  T
Q  202 aatgcatttcttcttggaaaagaatgtgattatactcatttcgaagctgtttttcaggaagg 263  Q
    || ||||||||||||| || || ||| |||||||||||||| |||| | ||||||| |||||    
T  38347678 aaagcatttcttcttgaaagagtatgcgattatactcattttgaagttctttttcaagaagg 38347617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 10711474 - 10711424
Alignment:
Q  192 ttttgataccaatgcatttcttcttggaaaagaatgtgattatactcattt 242  Q
    |||||||||||||| |||||||||||||| || ||||||||||| ||||||    
T  10711474 ttttgataccaatgtatttcttcttggaataggatgtgattataatcattt 10711424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 26972754 - 26972626
Alignment:
Q  110 atttctctttcttctgatgatggtttgagtatgaaagaaagagctatttctatcgccaaatttgacccagtgttccctatatttttgataccaatgcatt 209  Q
    |||| ||||||||||||||||||| ||||  || ||||| |   | ||| |||| |||||||||| ||| | ||| |   |||||||||||||| |||||    
T  26972754 atttttctttcttctgatgatggtctgagcgtggaagaaggcagtgtttttatcaccaaatttgatccacttttctcgtgatttttgataccaaagcatt 26972655  T
Q  210 tcttcttggaaaagaatgtgattatactc 238  Q
    |||||||||  ||| ||||| ||||||||    
T  26972654 tcttcttggtgaaggatgtggttatactc 26972626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 14759129 - 14759081
Alignment:
Q  190 atttttgataccaatgcatttcttcttggaaaagaatgtgattatactc 238  Q
    |||||||||||||| ||||||||||||||  ||| ||||| ||||||||    
T  14759129 atttttgataccaaagcatttcttcttggtgaaggatgtggttatactc 14759081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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