View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18815_low_8 (Length: 208)
Name: NF18815_low_8
Description: NF18815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18815_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5617820 - 5617627
Alignment:
| Q |
1 |
actgcatgctcatcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcatttctcattcgtttctcccacttga |
100 |
Q |
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| T |
5617820 |
actgcatgctcatcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcatttctcattcgtttctcccacttgg |
5617721 |
T |
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| Q |
101 |
ttttagactcgactctctcaactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagcttcgtaccactgcctttg |
194 |
Q |
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| T |
5617720 |
ttttagactcgactctctcgactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagcttcgcaccactgcctttg |
5617627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 21163107 - 21162914
Alignment:
| Q |
1 |
actgcatgctcatcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcatttctcattcgtttctcccacttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21163107 |
actgcatgctcatcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcatttctcattcgtttctcccacttgg |
21163008 |
T |
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| Q |
101 |
ttttagactcgactctctcaactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagcttcgtaccactgcctttg |
194 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21163007 |
ttttagactcgactctctcgactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagcttcgcaccactgcctttg |
21162914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 39823656 - 39823792
Alignment:
| Q |
60 |
cccttgaaaacgtgcatttctcattcgtttctcccacttgattttagactcgactctctcaactctttgaatcccttcatatgctatcacattctcaacc |
159 |
Q |
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|||||||||| ||||||||||||| || ||||| ||| || ||| || ||||||||||||||||||| ||||||| ||||||||||| |||| | |
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| T |
39823656 |
cccttgaaaattagcatttctcattctttgttcccatttgcttataggttcaactctctcaactctttgaacaccttcatgagctatcacattttcaatc |
39823755 |
T |
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| Q |
160 |
ttccaacaaatttcagcttcgtaccactgcctttgct |
196 |
Q |
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||||||||||| || ||||| ||||| |||||||||| |
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| T |
39823756 |
ttccaacaaatatctgcttcataccattgcctttgct |
39823792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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