View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18816_high_2 (Length: 250)
Name: NF18816_high_2
Description: NF18816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18816_high_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 40846854 - 40846617
Alignment:
| Q |
13 |
aatatccagatagtcattcttcatagacaaaaccttcattacataaaaagaaaagtgtgtgtagttaatccttttccgaccccgacaccaacacaatata |
112 |
Q |
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| T |
40846854 |
aatatccagatagtcaatcttcccagacaaaaccttcattacataaaaagaaaagtgtgtgtagttaatccttttccgaccccaacaccaacacaatata |
40846755 |
T |
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| Q |
113 |
ttccttatattgattagatacctaatgttataaaaccttattatgacaagattgtgaatgtggatggtgacagttactgttattggcacaccatacacat |
212 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| |
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| T |
40846754 |
ttccttatattgattagatacctaatgttatgaaaccttattatgacaagattgtgaatgtggatggtgacggttactattattggcgcaccatacacat |
40846655 |
T |
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| Q |
213 |
tgagttatctaccggagtaacaaaagcggaattttaaa |
250 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
40846654 |
tgagttatccaccggagtaacaaaagcggaattttaaa |
40846617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 40609273 - 40609330
Alignment:
| Q |
193 |
tattggcacaccatacacattgagttatctaccggagtaacaaaagcggaattttaaa |
250 |
Q |
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| T |
40609273 |
tattggcgcaccatacacattgagttatctaccagagtaacaaaagtggaattttaaa |
40609330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 8494305 - 8494458
Alignment:
| Q |
37 |
agacaaaaccttcattacataaaaagaaaagtgt--gtgtagttaatccttttccgaccccgacaccaacacaatatattccttatattgattagatacc |
134 |
Q |
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| T |
8494305 |
agacaaaaccttcattaaagaaaatgaaaagtgtatgtgtagttaatccttttccgaccccgacaccaacacaatatattccttatattgattacatgca |
8494404 |
T |
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| Q |
135 |
taatgttataaaaccttattatgacaagattgtgaatgtggatggtgacagtta |
188 |
Q |
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| T |
8494405 |
taatgttatgaaaccttatattgaaaagattgtgaatgtggatcgtgacggtta |
8494458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 29381070 - 29381013
Alignment:
| Q |
193 |
tattggcacaccatacacattgagttatctaccggagtaacaaaagcggaattttaaa |
250 |
Q |
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| T |
29381070 |
tattggcgcaccatacacattgagttatctatcggagtaacaaaagtgaaattttaaa |
29381013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 19807156 - 19807323
Alignment:
| Q |
17 |
tccagatagtcattcttcatagacaaaaccttcattacataaaaagaaaagtgt--gtgtagttaatccttttccgaccccgacaccaacacaatatatt |
114 |
Q |
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||||||||| || ||||| |||||||||| ||||| || |||||||||||||| ||||||||||||| | | | |||||||||||||||||||||||| |
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| T |
19807156 |
tccagatagccaagcttcacagacaaaaccatcattgcagaaaaagaaaagtgtgtgtgtagttaatccctcttcaaccccgacaccaacacaatatatt |
19807255 |
T |
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| Q |
115 |
ccttatattgattagatacctaatgttataaaaccttattatgacaagattgtgaatgtggatggtga |
182 |
Q |
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| T |
19807256 |
ccttgtattgatcagatgcctaatgttatgaaaccttatattgaaaagattgtgaatgtggatggtga |
19807323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 22520262 - 22520429
Alignment:
| Q |
17 |
tccagatagtcattcttcatagacaaaaccttcattacataaaaagaaaagtgt--gtgtagttaatccttttccgaccccgacaccaacacaatatatt |
114 |
Q |
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||||||||| || ||||| |||||||||| |||||||| |||||||||||||| ||||||||||| | | | | |||||||||||||||||||||||| |
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| T |
22520262 |
tccagatagccaaacttcacagacaaaaccatcattacagaaaaagaaaagtgtgtgtgtagttaattcctcttcaaccccgacaccaacacaatatatt |
22520361 |
T |
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| Q |
115 |
ccttatattgattagatacctaatgttataaaaccttattatgacaagattgtgaatgtggatggtga |
182 |
Q |
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|||| || ||| |||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||| |
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| T |
22520362 |
ccttgtaccgatcagatgcctaatgttatgaaaccttatattgaaaagattgtgaatgtggatggtga |
22520429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 14761905 - 14762082
Alignment:
| Q |
20 |
agatagtcattcttcatagacaaaaccttcattacataaaaagaaaagtgtg--tgtagttaatc---cttttccgaccccgacaccaacacaatatatt |
114 |
Q |
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||||||||| ||||| ||||||| ||||||||||| ||||||||||||||| ||| | || || ||| || | | ||| |||||||||||||||| |
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| T |
14761905 |
agatagtcaggcttcacagacaaacccttcattacaaaaaaagaaaagtgtgaatgtggatagtcaggcttctcagtgctcgataccaacacaatatatt |
14762004 |
T |
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| Q |
115 |
ccttatattgattagatacctaatgttataaaaccttattatgacaagattgtgaatgtggatggtgacagttactgt |
192 |
Q |
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| T |
14762005 |
ccttatatttatcatattcctaatgttatgaaacctcatattgaaaatattgtgaatgtggatggtgatggttactgt |
14762082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 1197673 - 1197840
Alignment:
| Q |
17 |
tccagatagtcattcttcatagacaaaaccttcattacataaaaagaaaag--tgtgtgtagttaatccttttccgaccccgacaccaacacaatatatt |
114 |
Q |
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||||||||| || ||||| |||||||||| ||||| || ||||||||||| |||||||||||||||| | | | |||||||||||||||||||||||| |
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| T |
1197673 |
tccagatagccaagcttcacagacaaaaccatcattgcagaaaaagaaaagcgtgtgtgtagttaatccctcttcaaccccgacaccaacacaatatatt |
1197772 |
T |
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| Q |
115 |
ccttatattgattagatacctaatgttataaaaccttattatgacaagattgtgaatgtggatggtga |
182 |
Q |
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|||| ||||||| |||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||| |
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| T |
1197773 |
ccttgtattgatcagatgcctaatgttatgaaaccttatattgaaaagattgtgaatgtggatggtga |
1197840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 25209437 - 25209294
Alignment:
| Q |
36 |
tagacaaaaccttcattacataaaaagaaaagtgtgtgtagttaatccttttccgaccccgacaccaacacaatatattccttatattgattagatacct |
135 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| ||| |
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| T |
25209437 |
tagacaaaaccatcattacagaaaaagaaaagtgtgtgtagtta-------------cccgacaccaacacaatatattcctaatattgatcagatgcct |
25209351 |
T |
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| Q |
136 |
aatgttataaaaccttattatgacaagattgtgaatgtggatggtgacagttactgt |
192 |
Q |
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|||||||| ||||||||| ||| || |||||||||||||||||||| | ||||||| |
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| T |
25209350 |
aatgttatgaaaccttatattgaaaatattgtgaatgtggatggtgatacttactgt |
25209294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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