View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18816_low_2 (Length: 432)

Name: NF18816_low_2
Description: NF18816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18816_low_2
NF18816_low_2
[»] chr5 (4 HSPs)
chr5 (14-396)||(40846261-40846634)
chr5 (90-146)||(40609387-40609443)
chr5 (130-205)||(8783628-8783703)
chr5 (25-76)||(40608819-40608870)
[»] chr8 (2 HSPs)
chr8 (98-216)||(7256114-7256231)
chr8 (157-213)||(44260319-44260375)
[»] chr7 (5 HSPs)
chr7 (99-198)||(4262424-4262523)
chr7 (97-213)||(4278212-4278326)
chr7 (22-76)||(4278121-4278175)
chr7 (130-205)||(18703460-18703535)
chr7 (135-212)||(7331135-7331212)
[»] chr4 (8 HSPs)
chr4 (1-76)||(29381384-29381459)
chr4 (136-211)||(34747100-34747175)
chr4 (23-137)||(29380911-29381021)
chr4 (126-214)||(8492105-8492192)
chr4 (127-210)||(25735393-25735476)
chr4 (129-235)||(29380560-29380666)
chr4 (119-173)||(29381448-29381501)
chr4 (135-212)||(2520271-2520348)
[»] chr6 (1 HSPs)
chr6 (148-212)||(26275452-26275516)
[»] chr2 (2 HSPs)
chr2 (135-212)||(29982175-29982252)
chr2 (135-212)||(37644429-37644506)
[»] chr1 (2 HSPs)
chr1 (135-212)||(32517526-32517603)
chr1 (135-212)||(45880779-45880856)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 40846634 - 40846261
Alignment:
Q  14 caaaggcggaattttaaaaatacacttacagtagttatgtaccagagtaacaaaatcaaaattnnnnnnnnnnnngcactttcgggagttatctactaga 113  Q
    |||| |||||||||||||||||||||      |||||| ||||||||||||||||||||||||            |||||||||||||||||||||||||    
T  40846634 caaaagcggaattttaaaaatacact------agttatctaccagagtaacaaaatcaaaattaaacaaaa----gcactttcgggagttatctactaga 40846545  T
Q  114 agcataaaatcgaaatttttaaaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatatg 213  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40846544 agcacaaaatcgaaatttttaaaaatgaacctcaggtatttatctaccggaagtgttattaaggacaattttgtaattttggagggcctaaagagatatg 40846445  T
Q  214 gagcccc-aaaaagaaacctccatgaagttttgggacgaaacaatcgatgtccctttttgtgtgccctacatgtaagggcttgggtctattcgaagtgaa 312  Q
    | | ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  40846444 ggggccctaaaaagaaacctccatgaagttttgggacgaaacaatcgatgtcccttgttgtgtgccctacatgtaagggcttgggtctattcaaagtgaa 40846345  T
Q  313 ccgagccttattaatatggaaaaccatattacatattaaaatgacgattgctcaataaaccctccaaaattgctcatattcatg 396  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40846344 ccgagccttattagtatggaaaaccatatgacatattaaaatgacgattgctcaataaaccctccaaaattgctcatattcatg 40846261  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 40609387 - 40609443
Alignment:
Q  90 cactttcgggagttatctactagaagcataaaatcgaaatttttaaaaatgaacctc 146  Q
    |||||||||||||||||||   |||||| ||||||||||| ||||||||||||||||    
T  40609387 cactttcgggagttatctagcggaagcacaaaatcgaaatgtttaaaaatgaacctc 40609443  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 8783703 - 8783628
Alignment:
Q  130 ttttaaaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaa 205  Q
    ||||||||||||| |||  ||| ||| |||||  | |||||  ||||||||||||| |||||||||||||||||||    
T  8783703 ttttaaaaatgaaactccagtagttaactaccaaatgtgtttgtaaggacaattttataattttggagggcctaaa 8783628  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 40608870 - 40608819
Alignment:
Q  25 ttttaaaaatacacttacagtagttatgtaccagagtaacaaaatcaaaatt 76  Q
    |||||||||||||||| || ||||||| |||| |||||||| ||||||||||    
T  40608870 ttttaaaaatacacttccaatagttatctaccggagtaacataatcaaaatt 40608819  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 7256114 - 7256231
Alignment:
Q  98 ggagttatctactagaagcataaaatcgaaatttttaaaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggag 197  Q
    |||||||| |||| |||| | ||||||||| ||||||||||| |||||| |||| ||| ||||| |||||||||| ||||||||||||||||||||| ||    
T  7256114 ggagttatttactggaagaacaaaatcgaa-tttttaaaaataaacctccggtagttaactaccggaagtgttatcaaggacaattttgtaattttgaag 7256212  T
Q  198 ggcctaaagagatatggag 216  Q
    |||||||||||||||||||    
T  7256213 ggcctaaagagatatggag 7256231  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 44260375 - 44260319
Alignment:
Q  157 ctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatatg 213  Q
    |||| ||| ||||||||||| |||||||||||||||| ||||| |||||||||||||    
T  44260375 ctacatgacgtgttattaagaacaattttgtaattttagaggggctaaagagatatg 44260319  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 4262424 - 4262523
Alignment:
Q  99 gagttatctactagaagcataaaatcgaaatttttaaaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagg 198  Q
    |||||||||||| |||||| |||||| ||||||||||||||||||||| | || ||| ||| | | |||||||||||||||| |||||||||||| ||||    
T  4262424 gagttatctactggaagcacaaaatcaaaatttttaaaaatgaacctctgatagttaactatcaggagtgttattaaggacagttttgtaattttagagg 4262523  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 4278212 - 4278326
Alignment:
Q  97 gggagttatctactagaagcataaaatcgaaatttttaaaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaatttt-gg 195  Q
    |||||||||||||| |||||| ||| | ||||||||  |||||||||||| |||| ||| ||||   |||||||||||||||||||||| ||||||| ||    
T  4278212 gggagttatctactggaagcacaaatttgaaattttataaaatgaacctccggtagttaactac---aagtgttattaaggacaattttctaattttagg 4278308  T
Q  196 agggcctaaagagatatg 213  Q
     |||||||||||||||||    
T  4278309 ggggcctaaagagatatg 4278326  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 4278121 - 4278175
Alignment:
Q  22 gaattttaaaaatacacttacagtagttatgtaccagagtaacaaaatcaaaatt 76  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||||| |||||    
T  4278121 gaattttaaaaatacacttgcagtagttatttaccggagtaacaaaatcgaaatt 4278175  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 18703460 - 18703535
Alignment:
Q  130 ttttaaaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaa 205  Q
    |||||| |||||||||| | || ||| ||||| || |||||| ||||||||||||| ||||||||| |||||||||    
T  18703460 ttttaagaatgaacctctgatagttaactaccagatgtgttagtaaggacaattttataattttggggggcctaaa 18703535  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 7331212 - 7331135
Alignment:
Q  135 aaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatat 212  Q
    |||||||||  | |||||||||||||| ||||| |||| ||||  | ||||||| |||| | ||||||||||||||||    
T  7331212 aaaatgaactaccggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatat 7331135  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29381384 - 29381459
Alignment:
Q  1 tctagtggagaagcaaaggcggaattttaaaaatacacttacagtagttatgtaccagagtaacaaaatcaaaatt 76  Q
    |||| ||||| | |||| ||| |||||||||||||||||| | |||||| | |||||||||||||||||| |||||    
T  29381384 tctattggagtaacaaaagcgaaattttaaaaatacacttccggtagttgtttaccagagtaacaaaatcgaaatt 29381459  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 34747175 - 34747100
Alignment:
Q  136 aaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagata 211  Q
    |||||||| || |||| ||||||||   | |||||||||||||||||||||||||||| |  ||||||||||||||    
T  34747175 aaatgaacatccggtagttatctacaaaacgtgttattaaggacaattttgtaattttaggaggcctaaagagata 34747100  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 29381021 - 29380911
Alignment:
Q  23 aattttaaaaatacacttacagtagttatgtaccagagtaacaaaatcaaaattnnnnnnnnnnnngcactttcgggagttatctactagaagcataaaa 122  Q
    |||||||||||||||||| | |||||||| ||||  |||||||||||| |||||            |||||| ||||||||||||||| |||||| ||||    
T  29381021 aattttaaaaatacacttccggtagttatctaccgcagtaacaaaatctaaatttcaaaaaa----gcacttccgggagttatctactggaagcacaaaa 29380926  T
Q  123 tcgaaatttttaaaa 137  Q
    | |||||||||||||    
T  29380925 ttgaaatttttaaaa 29380911  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 8492192 - 8492105
Alignment:
Q  126 aaatttttaaaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatatgg 214  Q
    |||||||||||||| ||| ||   || ||| |||||| | |||||||||| ||||||||||||||||||| |||  |||||||||||||    
T  8492192 aaatttttaaaaataaacgtccaatagttaactacctaatgtgttattaaagacaattttgtaattttgg-gggtttaaagagatatgg 8492105  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 25735393 - 25735476
Alignment:
Q  127 aatttttaaaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagat 210  Q
    |||||||  |||||||| || |||| |||||||| ||| ||||||||||| ||||||| ||| |||| | ||||| ||||||||    
T  25735393 aatttttttaaatgaacatccggtaattatctacatgatgtgttattaagaacaatttcgtatttttagggggccaaaagagat 25735476  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 29380666 - 29380560
Alignment:
Q  129 tttttaaaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatatggagccccaaaaagaa 228  Q
    |||| |||||||||||||   ||||||||||   ||||||||||||| ||||||||   |||||||| || ||| ||||||||  | | || ||||||||    
T  29380666 ttttaaaaaatgaacctccaatatttatctattagaagtgttattaaagacaatttgacaattttggtggacctgaagagatacaggggcctaaaaagaa 29380567  T
Q  229 acctcca 235  Q
    |||||||    
T  29380566 acctcca 29380560  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 29381448 - 29381501
Alignment:
Q  119 aaaatcgaaatttttaaaaatgaacctcaggtatttatctacctgaagtgttatt 173  Q
    |||||||||||||| |||||||||| || | |||||||||||| |||||||||||    
T  29381448 aaaatcgaaatttt-aaaaatgaacatccgatatttatctaccggaagtgttatt 29381501  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 2520271 - 2520348
Alignment:
Q  135 aaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatat 212  Q
    |||||||||  | |||||||||||||| ||||| |||| ||||  | ||||||| |||| | ||||||||||||||||    
T  2520271 aaaatgaactaccggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatat 2520348  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 26275516 - 26275452
Alignment:
Q  148 ggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatat 212  Q
    |||||||||||||| ||||| |||| ||||  | ||||||| |||| ||||||||||||||||||    
T  26275516 ggtatttatctaccggaagtcttataaaggttatttttgtatttttagagggcctaaagagatat 26275452  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 29982252 - 29982175
Alignment:
Q  135 aaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatat 212  Q
    |||||||||  | |||||||||||||| ||||| |||| ||||  | ||||||| |||| | ||||||||||||||||    
T  29982252 aaaatgaactaccggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatat 29982175  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 37644506 - 37644429
Alignment:
Q  135 aaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatat 212  Q
    |||||||||  | |||||||||||||| ||||| |||| ||||  | ||||||| |||| | ||||||||||||||||    
T  37644506 aaaatgaactaccggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatat 37644429  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 32517526 - 32517603
Alignment:
Q  135 aaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatat 212  Q
    |||||||||  | |||||||||||||| ||||| |||| ||||  | ||||||| |||| | ||||||||||||||||    
T  32517526 aaaatgaactaccggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatat 32517603  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 45880856 - 45880779
Alignment:
Q  135 aaaatgaacctcaggtatttatctacctgaagtgttattaaggacaattttgtaattttggagggcctaaagagatat 212  Q
    |||||||||  | |||||||||||||| ||||| |||| ||||  | ||||||| |||| | ||||||||||||||||    
T  45880856 aaaatgaactaccggtatttatctaccggaagtcttataaaggttatttttgtatttttagggggcctaaagagatat 45880779  T

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