View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18816_low_4 (Length: 227)
Name: NF18816_low_4
Description: NF18816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18816_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 4188578 - 4188374
Alignment:
| Q |
23 |
tcaataattaaatattacattatttttgttcaattttataaaacaggtatacccttagattaccttaccttcaagtttaaattgtttatgcattcaatat |
122 |
Q |
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| T |
4188578 |
tcaataattaaatattacattatttttgttcaattttataaaacaggtatacccttagattaccttaccttcaagtttaaattgtttatgcattcaatat |
4188479 |
T |
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| Q |
123 |
tataaaagactggtcactttgttccgaatgaggcttcatcagtttcattccaagtttattaaaaatagaagttaaccatgaatggaatgaatgttatttg |
222 |
Q |
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| T |
4188478 |
tataaaagactggtcactttgttccgaatgaggcttcatcagtttcattccaagtttattaaaaatagaagttaaccatgaatggaatgaatgttatttg |
4188379 |
T |
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| Q |
223 |
caatc |
227 |
Q |
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| T |
4188378 |
caatc |
4188374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 4181992 - 4181841
Alignment:
| Q |
41 |
attatttttgttcaattttataa-aacaggtatacccttagattaccttaccttcaagtttaaattgtttatgcattcaatattataaaagactggtcac |
139 |
Q |
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| T |
4181992 |
attatttttgatcaattttagaacaacagctatgcccttagactaccttatctccaagttagaattgctaatacattcaat-ttataaaagacttgtcac |
4181894 |
T |
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| Q |
140 |
tttgttccgaatgaggcttcatcagtttcattccaagtttattaaaaatagaa |
192 |
Q |
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| T |
4181893 |
tttgttttgaatgtgccttcataagtttcattcccagtttattaaaaatagaa |
4181841 |
T |
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