View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18817_high_1 (Length: 536)
Name: NF18817_high_1
Description: NF18817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18817_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 22 - 520
Target Start/End: Complemental strand, 43103126 - 43102625
Alignment:
| Q |
22 |
tttaaaatcatatt-gtcttcttcccctaacaagacaaacataatcatggagcaagtgcatttggtaagtgactacaccaaaccaaatacatgttccttt |
120 |
Q |
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| T |
43103126 |
tttaaaatcatatttgtcttcttcccctaacaagacaaacataatcatggagcaagtgcatttggtaagtgactacaccaaaccaaatacatgttccttt |
43103027 |
T |
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| Q |
121 |
tcaaccatcatggaagaaatgaaatccctaatgatgcttgcttttccaatagccataacagctcttattttctactctcgttccatggtgtccatgatgt |
220 |
Q |
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| T |
43103026 |
tcaaccatcatggaagaaatgaaatccctaatgatgcttgcttttccaatagccataacagctcttattttctattctcgttccatggtgtccatgatgt |
43102927 |
T |
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| Q |
221 |
ttttaggctacctaggagaacttgaacttgcagccggttcactcgccatcgccttcgccaacatcaccggctactcagttctctccggtctc--tctcgg |
318 |
Q |
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| T |
43102926 |
ttttaggctacctaggagaacttgaacttgcagccggttcactcgccatcgccttcgccaacatcaccggctactcagttctctccggtctctctctcgg |
43102827 |
T |
|
| Q |
319 |
aatggaacctctttgttcacaagccttcggagcaaaccgtcctaaactcctatccttaacacttcaacgttgcatcctcttcctattactatgttccatt |
418 |
Q |
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| T |
43102826 |
aatggaacctctctgttcacaagccttcggagcaaaccgtcctaaactcctatccttaacacttcaacgttgcatcctcttcctattactatgttccatt |
43102727 |
T |
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| Q |
419 |
cccatttccttcatgtggcttaacatgtcacaaatcctcatttggttgcaccagaacccaaagatcacagccatggctcacacatatctaatattctctc |
518 |
Q |
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| T |
43102726 |
cccatttccttcatgtggcttaacatgtcacaaatcctcatttggttgcaccagaacccaaagatcacagccatggctcacacatatctaatattctctc |
43102627 |
T |
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| Q |
519 |
tc |
520 |
Q |
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| T |
43102626 |
tc |
43102625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 33948682 - 33948749
Alignment:
| Q |
320 |
atggaacctctttgttcacaagccttcggagcaaaccgtcctaaactcctatccttaacacttcaacg |
387 |
Q |
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| T |
33948682 |
atggaacctctttgttctcaagcctttggtgctaaccgtccaaaacttctatcattaacacttcaacg |
33948749 |
T |
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