View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18817_high_3 (Length: 503)
Name: NF18817_high_3
Description: NF18817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18817_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 8537068 - 8536584
Alignment:
| Q |
1 |
acatatgtgtttgtgaacatgttgaagaagcttgagagcatcactgaatctactttgggcatgaaaagaaatggttaggttgattaagatactgattcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |
|
|
| T |
8537068 |
acatatgtgtttgtgaacatgttgaagaagcttgagagcatcactgaatctactttgggcatgaaaaaaaatggttaggttgattaagatactgttttag |
8536969 |
T |
|
| Q |
101 |
ttatagttagtagttttttaccaattttctttgcatccgtttctataactgtggacctacttattttgtttctttgattacatattttatcattttggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536968 |
ttatagttagtagttttttaccaattttctttgcatccgtttctataactgtggacctacttattttgtttctttgattacatattttatcattttggta |
8536869 |
T |
|
| Q |
201 |
aaatatgctatagtgggctagtttatcttttgttattttgagtatcattaaacttgagattgatcttcaaactaactgaattctatttgatgttatggat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8536868 |
aaatatgctatagtgggctagtttatcttttgttattttgagtatcattaaacttgagattgatcttcaaactaaccgaattctatttgatgttatggat |
8536769 |
T |
|
| Q |
301 |
ctcattatatggttttgattttatttacatccgaaatagagttcgacagcagtgttcttggtctgcatgatgagattttgatttttgaatgttgacaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536768 |
ctcattatatggttttgattttatttacatccgaaatagagttcgacaacagtgttcttggtctgcatgatgagattttgatttttgaatgttgacaatt |
8536669 |
T |
|
| Q |
401 |
ggcattgtctaatgttccttggtaggaatcaccccaaaggctatactctcgtaataatcttgcatagagtatatgaagctaatta |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8536668 |
ggcattgtctaatgttccttggtaggaatcatcccaaaggctatactctcgtaataattttgcatagagtatatgaagctaatta |
8536584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University