View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18817_high_4 (Length: 467)
Name: NF18817_high_4
Description: NF18817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18817_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 3151262 - 3151709
Alignment:
| Q |
1 |
tcacaggcatgcaaagaaatgctgctgcagccaagaaaactccacggaattttatttccagcagatgaaactgaacattgatgatacaccaatggagtac |
100 |
Q |
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| T |
3151262 |
tcacaggcatgcaaagaaatgctgctgcagccaagaaa-ctccacggaaatttatttccagcagatgaaactaaacattgatgacacaccaattgagtac |
3151360 |
T |
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| Q |
101 |
ttcttctgtagtgattgggagtgtactagaagagaaagtgagaatcttttgagcactatgaggaatcaaaaatgctattgtggtggaatactggacaaag |
200 |
Q |
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| T |
3151361 |
ttcttctgtagtgattgggagtgtactagaagagaaagtgggagtcttttgagcactatgaggaatcaaaaatgttattgtggtagagtactggacaaag |
3151460 |
T |
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| Q |
201 |
atgtagctccagaacatttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggc |
300 |
Q |
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| T |
3151461 |
atgtggctccagaacatctgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatctttttgtgatgcctaatgttttggc |
3151560 |
T |
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| Q |
301 |
aacagttgtacatctacatcagaagcttggaattgataccaatgatactattgtcgaacaaactgtggaaataagcaagaaagaggtatgtttttctatc |
400 |
Q |
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| T |
3151561 |
aacagttgtacatctacatcagaagcttggaattgataccaatgacactattgtcgaacaaactgtggaaataagcaagaaagaggtatgtttttctatc |
3151660 |
T |
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| Q |
401 |
ttctatataatctgtgattttgnnnnnnnnccttgtcatttgatgtttc |
449 |
Q |
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| T |
3151661 |
ttctatataatctgtgattttgttttttttccttgtcatttgatgtttc |
3151709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 21194706 - 21194788
Alignment:
| Q |
245 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagct |
327 |
Q |
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| T |
21194706 |
gaaactgctgcatttattatttccgacgatctttgtgtgatgcctaatgattttggaacagttatacaactacttcaaaagct |
21194788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 327
Target Start/End: Original strand, 21199931 - 21200041
Alignment:
| Q |
217 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
316 |
Q |
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| T |
21199931 |
tttgagcttaggaagcggttttgttaaggaaactgctgcatttattatttcagacgatctttatgtgatgcctaatgtttttgggacagttatacaacta |
21200030 |
T |
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| Q |
317 |
catcagaagct |
327 |
Q |
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| T |
21200031 |
cttcacaagct |
21200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 329
Target Start/End: Original strand, 24284442 - 24284554
Alignment:
| Q |
217 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
316 |
Q |
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| T |
24284442 |
tttgagtctaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagttataccacta |
24284541 |
T |
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| Q |
317 |
catcagaagcttg |
329 |
Q |
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| T |
24284542 |
cttcaaaagcttg |
24284554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 395
Target Start/End: Complemental strand, 24232270 - 24232120
Alignment:
| Q |
245 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatg |
344 |
Q |
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|||| |||||||||||||||||| || |||| || ||| |||||||||||||| | | || | || |||||| ||| ||||||||| | || || | || |
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| T |
24232270 |
gaaaatgctacttttatcatttctgatgatctttgtgttatgcctaatgtttttggagcaagtttaaatctacttcaaaagcttggagtcgagactattg |
24232171 |
T |
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| Q |
345 |
atactattgtcgaacaaactgtggaaataagcaagaaagaggtatgttttt |
395 |
Q |
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| T |
24232170 |
atgctattgaggaacaagctgttgacatcaacaagaaagaggcatgctttt |
24232120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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