View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18817_high_5 (Length: 349)
Name: NF18817_high_5
Description: NF18817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18817_high_5 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 35042481 - 35042824
Alignment:
| Q |
18 |
aagaacattaccaagataagaataagcttcccttctgtactccatctacctgaaaatccaatccatgaatctttgcacattaaattaggtttcaattgtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35042481 |
aagaacattaccaagataagaataagcttcccttctgtactccatctacctgaaaatccaatccatgaatctctgcacattaaattaggtttcaattgtc |
35042580 |
T |
|
| Q |
118 |
ttgagcagctatatcctgttgacaaccctacgttcccataagcactgcacaatttaatcatcat-----------taagtacgtaatttaccttgcattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |
|
|
| T |
35042581 |
ttgagcagctatatcctgttgacaaccctacgttcccataagcactgcacaatttaatcatcataatgttacccattagtacgtaatataccttgcattt |
35042680 |
T |
|
| Q |
207 |
aatccataatatagtaacttgcaactcaagtgaacagttggattgaactcatcgaattaatcgtttcttagatagatattgatttacatcaaatctgaac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35042681 |
aatccataatatagtaacttgcaactcaagtgaacggttggattgaactcatcgaattaatcgtttcttagatagatattgatttacatcaaatctgaac |
35042780 |
T |
|
| Q |
307 |
cgttgtaattctttgat-ccccaacaaaataaaattattgaagg |
349 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35042781 |
cgttgtaattctttgatcccccaacaaaataaaattattgaagg |
35042824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 34988919 - 34989067
Alignment:
| Q |
18 |
aagaacattaccaagataagaataagcttcccttctgtactccatctacctgaaaatccaatccatgaatctttgcacattaaattaggtttcaattgtc |
117 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||| || |||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||||| | |
|
|
| T |
34988919 |
aagaacattaccaaaataaggataaacttcccttttgcactccacctaccagaaaatccaatccatgaatctttgcacattaaatcatgtttcaattgcc |
34989018 |
T |
|
| Q |
118 |
ttgagcagctatatcctgttgacaaccctacgttcccataagcactgca |
166 |
Q |
| |
|
|||| || |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34989019 |
ttgaacaactatatcctgttgaaaaccctacgttcccataagcactgca |
34989067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 15560182 - 15560102
Alignment:
| Q |
18 |
aagaacattaccaagataagaataagcttcccttctgtactccatctacctgaaaatccaatccatgaatctttgcacatt |
98 |
Q |
| |
|
|||||||| ||||| ||||| ||| |||||| ||||||||||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
15560182 |
aagaacataaccaatataaggatacacttcccctctgtactccactttcccgaaaatccaatccatgaatctttgcacatt |
15560102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 15559753 - 15559829
Alignment:
| Q |
18 |
aagaacattaccaagataagaataagcttcccttctgtactccatctacctgaaaatccaatccatgaatctttgca |
94 |
Q |
| |
|
|||||||| ||||| ||||| ||| |||||| ||||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
15559753 |
aagaacataaccaatataaggatacacttcccctctgtactccactttcccgaaaatccaatccatgaatctttgca |
15559829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University