View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18817_low_10 (Length: 270)
Name: NF18817_low_10
Description: NF18817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18817_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 9452910 - 9453179
Alignment:
| Q |
1 |
gccaacggcattcaaaccagaagtaactaaggagagtgcaagtgctgtggagttggaggcaattccagcaaactgaactatagttgggctgtaatacatg |
100 |
Q |
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| T |
9452910 |
gccaacggcattcaaaccagaagtaactaaggagagtgcaagtgctgtggagttggaggcaattcctgcaaactgaactatagttgggctgtaatacatg |
9453009 |
T |
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| Q |
101 |
actgtattaataccgacaaattgttgaacaacttggacagtaatgcctgcgtagagtcctcttcgaactacgtcattagaccaagcaccctttagttttt |
200 |
Q |
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| T |
9453010 |
actgtattaataccgacaaattgttgaacaacttggacagtaatgcctgcgtagagtcctcttcgaactacgtcattagaccaagcaccctttagttttt |
9453109 |
T |
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| Q |
201 |
gtgcaagactatgaccgatcaagccttcctctgccttctcggcttcaatggattcatgcatggctttcat |
270 |
Q |
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| T |
9453110 |
gtgcaagactatgaccgatcaagccttcctctgccttctcggcttcaatggattcatgcatggctttcat |
9453179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 270
Target Start/End: Original strand, 9441680 - 9441948
Alignment:
| Q |
2 |
ccaacggcattcaaaccagaagtaactaaggagagtgcaagtgctgtggagttggaggcaattccagcaaactgaactatagttgggctgtaatacatga |
101 |
Q |
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| T |
9441680 |
ccaacagcattaagaccagaagtaaccaatgaaagtgcaaatgctgtggagttggaggcaattccagcaaactgaactatggttgggctgtaatacatga |
9441779 |
T |
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| Q |
102 |
ctgtattaataccgacaaattgttgaacaacttggacagtaatgcctgcgtagagtcctcttcgaactacgtcattagaccaagcaccctttagtttttg |
201 |
Q |
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| T |
9441780 |
ttgtattaataccgacaatttgttgaacaacttggacagtgatgcctgcgtagagtcctcttcgaactacgtcattagaccaggcaccctttagtttttg |
9441879 |
T |
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| Q |
202 |
tgcaagactatgaccgatcaagccttcctctgccttctcggcttcaatggattcatgcatggctttcat |
270 |
Q |
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| T |
9441880 |
tgcaagactatggccgatcaagccatcctctgccttctcggcttcaatggattcatgcatggctttcat |
9441948 |
T |
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