View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18817_low_11 (Length: 234)
Name: NF18817_low_11
Description: NF18817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18817_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 6342182 - 6341977
Alignment:
| Q |
14 |
gataattcttgtattgcactttgaagtcgttccacannnnnnnngaacttataaagagaaaatccggtgcaaggaggatcttgtaccgtaaggaattcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6342182 |
gataattcttgtattgcactttgaagtcgttccacattttttttgaacttataaagagaaaatccggtgcaaggaggatcttgtaccgtaaggaattcat |
6342083 |
T |
|
| Q |
114 |
tccaacattcatcggctttttccgtgtttcccttcatttggtatataatagcctgtaaaaaagaaaagagaatcaatgagaaaacttaatttgacaagtc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6342082 |
tccaacattcatcggctttttccgtgtttcccttcatttggtatataatagcctgtaaaaaagaaaagagaatcaatgagaaaacttaatttgacaagtc |
6341983 |
T |
|
| Q |
214 |
ttttct |
219 |
Q |
| |
|
|||||| |
|
|
| T |
6341982 |
ttttct |
6341977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University