View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18817_low_2 (Length: 522)
Name: NF18817_low_2
Description: NF18817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18817_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 32065530 - 32065027
Alignment:
| Q |
1 |
aattgtgagtgctggaggcagtacagtatggggaaatcctgcagatgtagggagtgttgtaggaggggaagcatttgatgtggttttggacaacaatggc |
100 |
Q |
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| T |
32065530 |
aattgtgagtgctggaggcagtacagtatggggaaatcctgcagatgtagggagtgttgtaggaggggaagcatttgatgtggttttggacaacaatggc |
32065431 |
T |
|
| Q |
101 |
aaggatcttgaggctgtgaggtttgttgtattgattcttgttagcttttgttcaatgattaacttgtatcgtatgccttcatgttaactcaacaggtttt |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32065430 |
aaggatcttgagtctgtgaggtttgttgtattgattcttgttagcttttgttcaatgattaacttgtattgtatgccttcatgttaactcaacaggtttt |
32065331 |
T |
|
| Q |
201 |
aagatgtaagagcagcagcgtgcaacacgtacaatatgtttatattacgcagacttgttagttgtccgatatgtgtcggtgttcgatactaaaacaagtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065330 |
aagatgtaagagcagcagcgtgcaacacgtacaatttgtttatattacgcagacttgttagttgtccgatatgtgtcggtgttcgatactaaaacaagtg |
32065231 |
T |
|
| Q |
301 |
tcaatgtttcatattgcaatacagttattattctgttaaagaaacagaaactattctaatatatatgcagccagctacagtctttaagaaagacatccta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
32065230 |
tcaatgtttcatattgcaatacagttattattctgttaaagaaacagaaactattctaat--atatgcagccaggtacagtctttaagaaagacatccta |
32065133 |
T |
|
| Q |
401 |
atcttgatcttaacttgtaggccagtgattgattgggccaagagtgctggtgctaagcaattcttgttcatcagtagtgctggaatctacaaaacgacag |
500 |
Q |
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| T |
32065132 |
atcttgatcttaacttgtaggccagtgattgattgggccaagagtgctggtgctaagcaattcttgttcatcagtagtgctggaatctacaaaacgacag |
32065033 |
T |
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| Q |
501 |
atgaac |
506 |
Q |
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|||||| |
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| T |
32065032 |
atgaac |
32065027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 385 - 505
Target Start/End: Complemental strand, 51281304 - 51281184
Alignment:
| Q |
385 |
taagaaagacatcctaatcttgatcttaacttgtaggccagtgattgattgggccaagagtgctggtgctaagcaattcttgttcatcagtagtgctgga |
484 |
Q |
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||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
51281304 |
taagacagacatcctaatctcaatctaaacttgtaggccagtgatcgattgggccaagagtactggtgccaagcaattcttgttcatcagtagtgctgga |
51281205 |
T |
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| Q |
485 |
atctacaaaacgacagatgaa |
505 |
Q |
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| T |
51281204 |
atctacaaaatgacagatgaa |
51281184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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