View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18817_low_7 (Length: 308)
Name: NF18817_low_7
Description: NF18817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18817_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 39083108 - 39082825
Alignment:
| Q |
7 |
atgtcgaagaaaatgctcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctt |
106 |
Q |
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| T |
39083108 |
atgtcgaagaagatgctcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctt |
39083009 |
T |
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| Q |
107 |
tgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacataaaatcaataagacatggtagactactagaatctaatag |
206 |
Q |
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| T |
39083008 |
tgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacataaaatcaataagacatggtagactactagaatctaatag |
39082909 |
T |
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| Q |
207 |
ctttgcaccaacctacattcaatatttttcctctattacattttattttatgtatatcttacctctttgtggtcatcatcatct |
290 |
Q |
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| T |
39082908 |
ctttgcaccaacctacattcaatatttttcctccattacattttattttatgtatatcttacctctttgtggtcatcatcatct |
39082825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 31727939 - 31727773
Alignment:
| Q |
7 |
atgtcgaagaaaatgctcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctt |
106 |
Q |
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| T |
31727939 |
atgtcgaagaagatgctcccgctccagacggtgtgaaataggcaccattcaatattagatctccttcagatctccagt-ccagttctcccactcaccttt |
31727841 |
T |
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| Q |
107 |
tgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacataaaatca |
174 |
Q |
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| T |
31727840 |
tgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacaaaaaatca |
31727773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 31727752 - 31727663
Alignment:
| Q |
165 |
cataaaatcaataagacatggtagactactagaatctaatagctttgcaccaacctacattcaatatttttcctctattacattttatttt |
255 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||| |||||||||||| |||| |
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| T |
31727752 |
cataaaaccaataagacatggtagactactagaatctaatagctttgcactaaactatatt-aatatttttccactattacattttttttt |
31727663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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