View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18818_high_2 (Length: 656)
Name: NF18818_high_2
Description: NF18818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18818_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 375 - 642
Target Start/End: Complemental strand, 2480673 - 2480406
Alignment:
| Q |
375 |
ttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatg |
474 |
Q |
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| T |
2480673 |
ttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcggccatattgatgaatggaaaaaatg |
2480574 |
T |
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| Q |
475 |
ccaaaaccaatttccctataccaaaggatcaaactgaagatgccaattccctaacaccaaattgtgatgataataataactctttccacacttcaaatgc |
574 |
Q |
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| T |
2480573 |
ccaaaaccaatttccctataccaaaggatcaaactgaagatgccaattccctaacaccaaattgtgatgataataataactctttccacacttcaaatgc |
2480474 |
T |
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| Q |
575 |
tctttctcatctccttaaacaaaagcttacaaaatgttgtcaaaaacaatctcaatcactcacttgtt |
642 |
Q |
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| T |
2480473 |
tctttctcatctccttaaacaaaagcttacaaaatgttgtcaaaaacaatctcaatcactcacttgtt |
2480406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 2480864 - 2480735
Alignment:
| Q |
10 |
acaaaggcattaggcaccaatcgatcatggtacaacgtaacaagttcagaggagttagacaacgacagtggggctcatgggtctcagaaattcgtcaccc |
109 |
Q |
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| T |
2480864 |
acaaaggcattaggcaccaatcgatcatggtacaacgtaacaagttcagaggagttagacaacgacagtggggctcatgggtctcagaaattcgtcaccc |
2480765 |
T |
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| Q |
110 |
tttactgtaatctacttctccaacactata |
139 |
Q |
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| T |
2480764 |
tttactgtaatctacttctccaacactata |
2480735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 47101420 - 47101311
Alignment:
| Q |
381 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaaaa |
480 |
Q |
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|||||||||||||| |||||||| |||||||| |||||||| | ||||| ||||||||||||||||| || || || |||| ||| | ||||||||||| |
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| T |
47101420 |
aggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaaatgccaaaa |
47101321 |
T |
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| Q |
481 |
ccaatttccc |
490 |
Q |
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| T |
47101320 |
caaatttccc |
47101311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 381 - 491
Target Start/End: Complemental strand, 2428746 - 2428636
Alignment:
| Q |
381 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaaaa |
480 |
Q |
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||||| || ||||| ||| |||| |||||||||||||| || | ||||| |||||||||||| |||||||||| | |||| ||||| |||||| |||| |
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| T |
2428746 |
aggaaaaggagggtttggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagccattctaatgagtggaagaaatgcaaaaa |
2428647 |
T |
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| Q |
481 |
ccaatttccct |
491 |
Q |
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| T |
2428646 |
caaatttccct |
2428636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 1726243 - 1726313
Alignment:
| Q |
381 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagc |
451 |
Q |
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| T |
1726243 |
aggaagacaagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagc |
1726313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 379 - 491
Target Start/End: Original strand, 49532564 - 49532676
Alignment:
| Q |
379 |
acaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaa |
478 |
Q |
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|||| ||||||||||| ||| |||| ||||||||||| ||||| || ||||| ||||||||||||||||| || || ||||||||||| ||| ||| || |
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| T |
49532564 |
acagaaagagaagggtgtggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaattttgatgaatggtcaaagtgcaaa |
49532663 |
T |
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| Q |
479 |
aaccaatttccct |
491 |
Q |
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| T |
49532664 |
gactaatttccct |
49532676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 49532342 - 49532403
Alignment:
| Q |
51 |
aagttcagaggagttagacaacgacagtggggctcatgggtctcagaaattcgtcacccttt |
112 |
Q |
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| T |
49532342 |
aagttcagaggagtcaggcagcgccagtggggctcttgggtgtcagaaattcgccacccttt |
49532403 |
T |
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