View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18818_high_3 (Length: 459)
Name: NF18818_high_3
Description: NF18818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18818_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 263 - 445
Target Start/End: Original strand, 38005509 - 38005691
Alignment:
| Q |
263 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaaacaactcg |
362 |
Q |
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| T |
38005509 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaaacaactca |
38005608 |
T |
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| Q |
363 |
aatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactatgtt |
445 |
Q |
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| T |
38005609 |
aatgcaatgccgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaacgatgtt |
38005691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 38005257 - 38005401
Alignment:
| Q |
20 |
atgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttatttggacccaacaaacaatgtcccaatatt |
119 |
Q |
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| T |
38005257 |
atgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttatttggacccaacaaacaatgtcccaatatt |
38005356 |
T |
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| Q |
120 |
ctcaaaactggttgcaacaattcccatggcattggaaccctaccg |
164 |
Q |
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| T |
38005357 |
ctcaaaactggttgcaacaattcccatggcattggaaccctaccg |
38005401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 263 - 445
Target Start/End: Complemental strand, 26462304 - 26462122
Alignment:
| Q |
263 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaaacaactcg |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| || |||||| |||||||||||||| |
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| T |
26462304 |
atacatgtcaccatcttcaccagcccaaatcttacaaaagttacaaaaatcaatttttggtgaaacaggcatttcagatattttgctgtaaaacaactcg |
26462205 |
T |
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| Q |
363 |
aatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactatgtt |
445 |
Q |
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| T |
26462204 |
aatgcaatgcctacgattcgagctcttcgtgttgaccgaacagtgccgtgtggctcaagcgaaggcgataaaacaacgatgtt |
26462122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 26462550 - 26462407
Alignment:
| Q |
20 |
atgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttatttggacccaacaaacaatgtcccaatatt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
26462550 |
atgcattgccctagcaaacaaacacctacatgcttcacttgctttctcaaacaacattgtatccttgttatttggtcccaacaaacaatgtcccaatatt |
26462451 |
T |
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| Q |
120 |
ctcaaaactggttgcaacaattcccatggcattggaaccctacc |
163 |
Q |
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| T |
26462450 |
ctcaaaactggttgtaacaattcccatggcattggaaccctacc |
26462407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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